Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024393.1

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

1955 .. 2974

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024393.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgagcattgaagaggtggttggagaatgtaagctgttttactttgccggggcagagactacctcaatcttgcttacttggactatgattctactctgtagatatccaaattggcaggctcgtgccagagaagaggtttttcaagtatttggcaacaagaaaccagattttgatgggctcgttcacctaaaagttgtcaccatgattttatatgaggttctgaggttatacccaccagtacctgtgatgactcgaactgttcagaaggaaacacagctcggaaatttgttactcccagctggagtgcagttgtcattaccaatattcctggttcagcaagacgaacaactgtggggtgaggatgcaaaggaattcaacccagagagattttcagaaggaatttcaaaggcaacaaagggtcaggtttcatttatcccattcggatggggtcctcggatatgcattggacaaaactttggtttgatggaagcaaaaatggcgttgtccttgatattacgtagcttcacatttgagctttccccatcctatactcatggtccaatcacggctataacgattcgaccacaatatggtgcacacattatcttgcaaaaactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

206

Amino Acids

23.36

Weight (kDa)

6.83

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AcsI	RAATTY	3 cut(s)	283, 371, 399
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	11, 143, 376, 405
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	5 cut(s)	34, 277, 299, 522, 535
AluI	AGCT	5 cut(s)	34, 277, 299, 522, 535
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	1 cut(s)	50
Alw44I	GTGCAC	1 cut(s)	594
AlwNI	CAGNNNCTG	1 cut(s)	242
ApaLI	GTGCAC	1 cut(s)	594
ApoI	RAATTY	3 cut(s)	283, 371, 399
AspS9I	GGNCC	2 cut(s)	449, 557
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	176, 190, 368
AvaII	GGWCC	2 cut(s)	449, 557
BaeGI	GKGCMC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	598
BccI	CCATC	4 cut(s)	167, 438, 478, 550
BceAI	ACGGC	1 cut(s)	582
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	97
Bme1390I	CCNGG	2 cut(s)	49, 329
Bme18I	GGWCC	2 cut(s)	449, 557
BmgT120I	GGNCC	2 cut(s)	449, 557
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	49, 329
BmsI	GCATC	1 cut(s)	352
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	518
BsaJI	CCNNGG	2 cut(s)	48, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	48, 452
BseGI	GGATG	3 cut(s)	367, 449, 542
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	598
BseYI	CCCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	180, 598
BspCNI	CTCAG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	48, 452
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	259, 351, 618
Bst6I	CTCTTC	2 cut(s)	6, 126
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	3 cut(s)	367, 449, 542
BstMAI	GTCTC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	47, 327
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	598
BstSNI	TACGTA	1 cut(s)	518
BstXI	CCANNNNNNTGG	1 cut(s)	444
BtsCI	GGATG	3 cut(s)	367, 449, 542
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	449, 557
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	2 cut(s)	202, 554
CviJI	RGCY	8 cut(s)	34, 119, 178, 277, 299, 522, 535, 569
CviKI_1	RGCY	8 cut(s)	34, 119, 178, 277, 299, 522, 535, 569
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	6, 126
EarI	CTCTTC	2 cut(s)	6, 126
Eco105I	TACGTA	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	449, 557
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	205, 557
FatI	CATG	2 cut(s)	201, 553
FokI	GGATG	3 cut(s)	374, 456, 529
FriOI	GRGCYC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	321
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	205, 557
HinfI	GANTC	3 cut(s)	88, 250, 577
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	3 cut(s)	176, 190, 368
Hpy166II	GTNNAC	2 cut(s)	184, 596
Hpy188I	TCNGA	6 cut(s)	222, 264, 281, 394, 443, 456
Hpy8I	GTNNAC	2 cut(s)	184, 596
HpyAV	CCTTC	2 cut(s)	259, 389
HpyCH4III	ACNGT	3 cut(s)	259, 351, 618
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	5 cut(s)	307, 365, 462, 596, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	205, 557
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	2 cut(s)	196, 288
MboII	GAAGA	2 cut(s)	23, 143
MhlI	GDGCHC	2 cut(s)	180, 598
MluCI	AATT	4 cut(s)	109, 283, 371, 399
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	7, 73, 127, 208, 216, 352, 462
Mph1103I	ATGCAT	1 cut(s)	464
MslI	CAYNNNNRTG	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	49, 329
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	49
NlaIII	CATG	2 cut(s)	205, 557
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	88, 577
PflMI	CCANNNNNTGG	1 cut(s)	590
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	2 cut(s)	449, 557
PspPPI	RGGWCCY	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	442
Sau96I	GGNCC	2 cut(s)	449, 557
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	49, 329
SduI	GDGCHC	2 cut(s)	180, 598
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	97
SinI	GGWCC	2 cut(s)	449, 557
SmiMI	CAYNNNNRTG	1 cut(s)	442
SnaBI	TACGTA	1 cut(s)	518
Sse9I	AATT	4 cut(s)	109, 283, 371, 399
SspI	AATATT	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	47, 327
TaaI	ACNGT	3 cut(s)	259, 351, 618
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	2 cut(s)	253, 580
TasI	AATT	4 cut(s)	109, 283, 371, 399
TfiI	GAWTC	2 cut(s)	88, 577
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	590
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	2 cut(s)	449, 557
XapI	RAATTY	3 cut(s)	283, 371, 399
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.