Rh5DG204600

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
22677129 .. 22681063
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG204600.1

Sequence Viewer

Length: 1179 bp
ATGGAAGTAACAGTGGCTACTAGAGTAGCCCTGAGCCTTGTCTTTGTTAGCATAATAGTAAGATGGGTATGGAGTCTTCTGGATTGGGTGTGGCTTAAGCCGAAGAAGCTCGAAAGATGTTTGAGGCAGCAAGGCTTTAAAGGCAATTCTTACAGGCTTTTGTATGGGGACATGAAGGAGAACGCTATCATGCTCAAACAAGCAAAATCCAAACCCATGAACCTCTCAACCTCCCATGACATAGCACCCCGAGTCACTCCTCTTCTGGATAAAACTGTGAAAACTTACGGTAAGAACTCTTTTGTGTGGATTGGGCCCGTGCCAAGGGTGAACATTATGAATCCAGAAGATTTGAAAGATATCTTCGCAAAACATACTGATTTTCAAAAGCCAGCATTAAACCCACTTACGAAGTTGCTAGCAACAGGCCTTGCAAACTATGAAGGGGAGAAGTGGGCTAAACACAGACGGATTATCAATCCAACGTTCCATTCTGAGAAGCTAAAGCGTATGTTGCCAGCATTTTACCAAAGTTGTAATGACATGATTAAGGAATGGGAGACAGCGGTGTCCAACCAGAGTTCATCATCTGCATTTGATGTTTGGCCTTCTCTCCAAAATTTAACAGCTGATGTGATTTCTAGGACGGCATTTGGAAGTAGTTATCATGAAGGAAGAAAAATATTTGAACTCCTAAAAGAGCAAGCAATATATGCAATAAAAACCTTACAAAGTGTTTACATTCCAGGATGGAGGTTTGTACCAACTAAGATGAACAAGAGGATGAAACAAATTGACGAAGAAATAAGAGGTTTACTCAAGGGTATTATAAATAAAAGAGAGCAAGCCATTATGGCAGGTGAAGCAACCAAAGATGACTTATTAGGTGCACTTATGGAATCGAACCTGAAGGACATTCAGGATCATGGGAAGAACAACAAAAATGTTGGGATGAGTATCGAAGATGTAATTGAAGAATGTAAGCTTTTTTACTTTGCTGGGCAAGAGACCACTTCAGTGTTATTGGTTTGGACAATGGTACTACTTTGTCAAAATCAAAATTGGCAAGATCAAGCAAGAGAAGAGGTTTTGCAAGTCTTTGGAATGAACAAGCCAGACTTCGATGGTCTAACTCACCTAAAAGTTGTAAGTATATATAATATATTACTTTTACTCTAA

Protein Analysis

392

Amino Acids

45.0

Weight (kDa)

9.23

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 90 - 383 5.2e-44 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
AarI CACCTGC 1 cut(s) 848
AasI GACNNNNNNGTC 1 cut(s) 568
Acc36I ACCTGC 1 cut(s) 848
AciI CCGC 1 cut(s) 566
AclI AACGTT 1 cut(s) 485
AclWI GGATC 1 cut(s) 930
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 2 cut(s) 929, 999
AfaI GTAC 2 cut(s) 762, 1041
AfiI CCNNNNNNNGG 1 cut(s) 324
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 4 cut(s) 355, 386, 689, 974
AjnI CCWGG 1 cut(s) 745
AjuI GAANNNNNNNTTGG 2 cut(s) 475, 507
AleI CACNNNNGTG 1 cut(s) 1016
AluBI AGCT 4 cut(s) 109, 502, 629, 985
AluI AGCT 4 cut(s) 109, 502, 629, 985
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 2 cut(s) 554, 1001
Alw44I GTGCAC 1 cut(s) 888
AlwI GGATC 1 cut(s) 930
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 3 cut(s) 314, 427, 605
ApaI GGGCCC 1 cut(s) 318
ApaLI GTGCAC 1 cut(s) 888
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 619
AspS9I GGNCC 2 cut(s) 314, 315
AsuHPI GGTGA 3 cut(s) 340, 872, 1127
AsuNHI GCTAGC 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 249
BaeGI GKGCMC 2 cut(s) 318, 892
BanII GRGCYC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 892
BbvI GCAGC 1 cut(s) 139
BccI CCATC 3 cut(s) 57, 744, 1118
BceAI ACGGC 1 cut(s) 663
BciT130I CCWGG 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 554, 1001
BfaI CTAG 3 cut(s) 21, 419, 642
BfrI CTTAAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 848
BglI GCCNNNNNGGC 1 cut(s) 854
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 747
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 314, 315
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 747
BmtI GCTAGC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 68
BplI GAGNNNNNCTC 2 cut(s) 801, 833
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 803
BsaBI GATNNNNATC 1 cut(s) 956
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 956
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 3 cut(s) 755, 789, 957
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 23, 486
BseRI GAGGAG 1 cut(s) 249
BseSI GKGCMC 2 cut(s) 318, 892
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 998
BshFI GGCC 3 cut(s) 316, 429, 607
BsiHKAI GWGCWC 1 cut(s) 892
BsiHKCI CYCGRG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 2 cut(s) 554, 1001
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 3 cut(s) 316, 429, 607
Bso31I GGTCTC 1 cut(s) 1001
BsoBI CYCGRG 1 cut(s) 249
Bsp120I GGGCCC 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 318, 892
Bsp143I GATC 2 cut(s) 922, 1069
BspACI CCGC 1 cut(s) 566
BspANI GGCC 3 cut(s) 316, 429, 607
BspCNI CTCAG 2 cut(s) 24, 487
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 848
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 1 cut(s) 930
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 1001
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 2 cut(s) 922, 1069
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 3 cut(s) 13, 277, 290
Bst6I CTCTTC 2 cut(s) 267, 1077
BstAFI CTTAAG 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 713
BstC8I GCNNGC 5 cut(s) 393, 420, 519, 705, 846
BstDEI CTNAG 3 cut(s) 32, 495, 768
BstF5I GGATG 3 cut(s) 755, 789, 957
BstKTI GATC 2 cut(s) 925, 1072
BstMAI GTCTC 2 cut(s) 554, 1001
BstMBI GATC 2 cut(s) 922, 1069
BstMWI GCNNNNNNNGC 6 cut(s) 106, 141, 514, 713, 854, 863
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 745
BstSLI GKGCMC 2 cut(s) 318, 892
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 68
BsuRI GGCC 3 cut(s) 316, 429, 607
BtsCI GGATG 3 cut(s) 755, 789, 957
BtsIMutI CAGTG 2 cut(s) 18, 1023
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 5 cut(s) 393, 420, 519, 705, 846
CciI TCATGA 1 cut(s) 667
Cfr13I GGNCC 2 cut(s) 314, 315
Csp6I GTAC 2 cut(s) 761, 1040
CviAII CATG 7 cut(s) 172, 190, 217, 236, 544, 668, 926
CviQI GTAC 2 cut(s) 761, 1040
DdeI CTNAG 3 cut(s) 32, 495, 768
DpnI GATC 2 cut(s) 924, 1071
DpnII GATC 2 cut(s) 922, 1069
DraI TTTAAA 1 cut(s) 139
DrdI GACNNNNNNGTC 1 cut(s) 568
DseDI GACNNNNNNGTC 1 cut(s) 568
Eam1104I CTCTTC 2 cut(s) 267, 1077
EarI CTCTTC 2 cut(s) 267, 1077
Eco130I CCWWGG 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 1001
Eco32I GATATC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 929, 999
Eco88I CYCGRG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 745
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 7 cut(s) 175, 193, 220, 239, 547, 671, 929
FalI AAGNNNNNCTT 2 cut(s) 1103, 1135
FaqI GGGAC 1 cut(s) 182
FatI CATG 7 cut(s) 171, 189, 216, 235, 543, 667, 925
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 3 cut(s) 762, 796, 964
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 3 cut(s) 21, 419, 642
GluI GCNGC 1 cut(s) 128
GsaI CCCAGC 1 cut(s) 1002
HaeIII GGCC 3 cut(s) 316, 429, 607
Hin1II CATG 7 cut(s) 175, 193, 220, 239, 547, 671, 929
HindIII AAGCTT 1 cut(s) 983
HinfI GANTC 4 cut(s) 73, 252, 340, 899
HphI GGTGA 3 cut(s) 340, 872, 1127
Hpy166II GTNNAC 4 cut(s) 331, 739, 815, 890
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 5 cut(s) 80, 266, 344, 668, 920
Hpy8I GTNNAC 4 cut(s) 331, 739, 815, 890
HpyAV CCTTC 5 cut(s) 169, 437, 618, 665, 904
HpyCH4III ACNGT 3 cut(s) 13, 277, 290
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 5 cut(s) 434, 593, 716, 890, 1093
HpyF10VI GCNNNNNNNGC 6 cut(s) 106, 141, 514, 713, 854, 863
HpyF3I CTNAG 3 cut(s) 32, 495, 768
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 7 cut(s) 175, 193, 220, 239, 547, 671, 929
Kzo9I GATC 2 cut(s) 922, 1069
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 3 cut(s) 21, 419, 642
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 2 cut(s) 7, 253
MalI GATC 2 cut(s) 924, 1071
MboI GATC 2 cut(s) 922, 1069
MhlI GDGCHC 2 cut(s) 318, 892
MluCI AATT 5 cut(s) 145, 619, 792, 969, 1060
MlyI GAGTC 2 cut(s) 82, 261
MmeI TCCRAC 2 cut(s) 506, 597
MnlI CCTC 8 cut(s) 117, 233, 241, 270, 747, 774, 803, 1078
MseI TTAA 5 cut(s) 96, 138, 398, 549, 623
MslI CAYNNNNRTG 1 cut(s) 1016
MspA1I CMGCKG 2 cut(s) 566, 629
MspCI CTTAAG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 747
MvaI CCWGG 1 cut(s) 747
MwoI GCNNNNNNNGC 6 cut(s) 106, 141, 514, 713, 854, 863
NdeII GATC 2 cut(s) 922, 1069
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 7 cut(s) 175, 193, 220, 239, 547, 671, 929
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 1016
PagI TCATGA 1 cut(s) 667
PaqCI CACCTGC 1 cut(s) 848
PceI AGGCCT 1 cut(s) 429
PfeI GAWTC 2 cut(s) 340, 899
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 2 cut(s) 81, 260
PpsI GAGTC 2 cut(s) 81, 260
PsiI TTATAA 1 cut(s) 830
Psp1406I AACGTT 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 745
PspFI CCCAGC 1 cut(s) 998
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 1 cut(s) 316
PspOMI GGGCCC 1 cut(s) 314
PspPI GGNCC 2 cut(s) 314, 315
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 2 cut(s) 762, 1041
RsaNI GTAC 2 cut(s) 761, 1040
RseI CAYNNNNRTG 1 cut(s) 1016
SaqAI TTAA 5 cut(s) 96, 138, 398, 549, 623
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 2 cut(s) 922, 1069
Sau96I GGNCC 2 cut(s) 314, 315
SchI GAGTC 2 cut(s) 82, 261
ScrFI CCNGG 1 cut(s) 747
SduI GDGCHC 2 cut(s) 318, 892
SmiMI CAYNNNNRTG 1 cut(s) 1016
SmlI CTYRAG 2 cut(s) 95, 818
SmoI CTYRAG 2 cut(s) 95, 818
Sse9I AATT 5 cut(s) 145, 619, 792, 969, 1060
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 1 cut(s) 566
SspI AATATT 1 cut(s) 684
SspMI CTAG 3 cut(s) 21, 419, 642
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 3 cut(s) 13, 277, 290
TaiI ACGT 1 cut(s) 488
TaqI TCGA 4 cut(s) 111, 902, 960, 1122
TasI AATT 5 cut(s) 145, 619, 792, 969, 1060
TfiI GAWTC 2 cut(s) 340, 899
Tru1I TTAA 5 cut(s) 96, 138, 398, 549, 623
Tru9I TTAA 5 cut(s) 96, 138, 398, 549, 623
TscAI CASTG 2 cut(s) 18, 1023
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 9 cut(s) 188, 233, 353, 456, 573, 684, 788, 800, 1121
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 2 cut(s) 18, 1023
Vha464I CTTAAG 1 cut(s) 95
VneI GTGCAC 1 cut(s) 888
XapI RAATTY 1 cut(s) 619
XspI CTAG 3 cut(s) 21, 419, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.