Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

71144297 .. 71144910

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG517600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAGACTATCATACTTTTAACACTTTGATCTTCTCTTTGGTTTCACTGATTGTTTATTCTGCTCTGAGAGTCATCAATGTGTATTGGTGGAGACCCAGAAGCTTAGAGAAGCAGTTAAGAAAGCAAGGGATCAGAGGAAGATCTTACAGGCTTTTCCAGGATGACATGAAAGAGATCAGTAGCTCCAACATGGAAGCTTGGTCCAAACCCATGTCCCTCAACCACCAGATTGCCCCACGTGTCTTCCCATTCTTCTATCAAATGGTTCAAAACTATGGGAAAGTGAGTCTGTGTTGGATTGGAACAAGGCCAAGGCTAGTAATAGCTGACCCGGAGATGATCAAGTCGATATTAGCAGACAAGAATGGACATATTATAAAGCCACCACTGAACCCACTTGTCAATCTTCTGCAACTCGGAGTTACAACCTTGGAGGGAGAGCAATGGGCCAAGCGCAGAAGGCTCATTAGCCCCGCCTTCCACCTCGAGAAATTAAAGGTACACACCAACTCTCTCTTTCAGGCATTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

178

Amino Acids

20.84

Weight (kDa)

9.95

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	83 - 166	1.4e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	1 cut(s)	140
AcvI	CACGTG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	504
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	4 cut(s)	105, 186, 200, 329
AluI	AGCT	4 cut(s)	105, 186, 200, 329
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	311, 450
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	204, 450
AsuC2I	CCSGG	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	204
BbrPI	CACGTG	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	12, 238
BciT130I	CCWGG	1 cut(s)	161
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	320
BglII	AGATCT	1 cut(s)	143
Bme1390I	CCNGG	2 cut(s)	161, 335
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	204, 450
BmrFI	CCNGG	2 cut(s)	161, 335
BpiI	GAAGAC	2 cut(s)	12, 238
BpuMI	CCSGG	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	314, 432
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	314, 432
BseGI	GGATG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	313, 452
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	313, 452
Bso31I	GGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	488
Bsp143I	GATC	5 cut(s)	30, 132, 143, 177, 342
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	313, 452
BspCNI	CTCAG	1 cut(s)	60
BspPI	GGATC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	314, 432
BssMI	GATC	5 cut(s)	30, 132, 143, 177, 342
BssT1I	CCWWGG	2 cut(s)	314, 432
Bst2UI	CCWGG	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	68, 106
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	5 cut(s)	33, 135, 146, 180, 345
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	5 cut(s)	30, 132, 143, 177, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	159, 333
BstV2I	GAAGAC	2 cut(s)	12, 238
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	313, 452
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	47, 389
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	204, 450
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	3 cut(s)	169, 193, 214
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	2 cut(s)	68, 106
DpnI	GATC	5 cut(s)	32, 134, 145, 179, 344
DpnII	GATC	5 cut(s)	30, 132, 143, 177, 342
Eco130I	CCWWGG	2 cut(s)	314, 432
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	204
Eco72I	CACGTG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	314, 432
ErhI	CCWWGG	2 cut(s)	314, 432
FaeI	CATG	3 cut(s)	172, 196, 217
FaiI	YATR	7 cut(s)	15, 170, 194, 215, 279, 375, 380
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	3 cut(s)	168, 192, 213
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	342
FokI	GGATG	1 cut(s)	176
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	313, 452
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	172, 196, 217
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HindIII	AAGCTT	2 cut(s)	103, 198
HinfI	GANTC	2 cut(s)	72, 289
HpaII	CCGG	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	3 cut(s)	69, 137, 422
Hpy188III	TCNNGA	1 cut(s)	490
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	2 cut(s)	456, 490
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	2 cut(s)	68, 106
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	3 cut(s)	172, 196, 217
HspAI	GCGC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	30, 132, 143, 177, 342
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	7 cut(s)	112, 136, 146, 173, 242, 348, 509
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	5 cut(s)	32, 134, 145, 179, 344
MboI	GATC	5 cut(s)	30, 132, 143, 177, 342
MboII	GAAGA	6 cut(s)	17, 25, 153, 238, 247, 401
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	81, 298
MmeI	TCCRAC	2 cut(s)	213, 278
MnlI	CCTC	4 cut(s)	131, 230, 430, 497
MseI	TTAA	3 cut(s)	21, 119, 497
MslI	CAYNNNNRTG	1 cut(s)	80
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	161, 335
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	463
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	5 cut(s)	30, 132, 143, 177, 342
NlaIII	CATG	3 cut(s)	172, 196, 217
PaeR7I	CTCGAG	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	159
PleI	GAGTC	2 cut(s)	80, 297
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
PpsI	GAGTC	2 cut(s)	80, 297
Ppu21I	YACGTR	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	204, 450
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	21, 119, 497
Sau3AI	GATC	5 cut(s)	30, 132, 143, 177, 342
Sau96I	GGNCC	2 cut(s)	204, 450
SchI	GAGTC	2 cut(s)	81, 298
ScrFI	CCNGG	2 cut(s)	161, 335
SetI	ASST	8 cut(s)	107, 188, 202, 244, 331, 434, 489, 504
Sfr274I	CTCGAG	1 cut(s)	488
SinI	GGWCC	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	1 cut(s)	494
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	159, 333
StyI	CCWWGG	2 cut(s)	314, 432
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	350, 489
TasI	AATT	1 cut(s)	494
Tru1I	TTAA	3 cut(s)	21, 119, 497
Tru9I	TTAA	3 cut(s)	21, 119, 497
TscAI	CASTG	2 cut(s)	54, 396
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	54, 396
VpaK11BI	GGWCC	1 cut(s)	204
XhoI	CTCGAG	1 cut(s)	488
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.