Rh1CG084000

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
17508817 .. 17513350
4534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG084000.1

Sequence Viewer

Length: 1059 bp
ATGTTGCCAGCATTTTATCAAAGCTGCACTGATATGATTAGCAATTGGGAGATCATGGTGTCGAAGGAGGGATCATGTGAATTGGATATTTGGCCTTTCCTTCAAAATATGACAGGAGATGTGATTTCTAGGACAGCATTTGGTAGTAGTTATGAAGAAGGGAGAACAATATTTGAACTCCAGAAAGAACAAGTACAACTCTTAAGTAAAGCCTTATTCATTGTTTTCATTCCAGGATTGAGGTTTCTACCAACAGAGTTGAATAGGAGGATGAAGGCAATTAGCAAAGAAATAGAAGCAACATTGAAGCATATTATTAGTAAAAAAGAGGAGGCAATGAAAACTGGTGATGAAGCCTCTAAGAATGACTTATTAGGGATACTTCTGGAATCCAATTGGAAAGAAATTCGACAGTATGGGGGGAACAAGAATGTTGGAATGAGCATTGAAGAGGTGGTTGGAGAATGTAAGCTGTTTTACTTTGCCGGGGCAGAGACTACCTCAATCTTGCTTACTTGGACTATGATTCTACTCTGTAGATATCCAAATTGGCAGGCTCGTGCCAGAGAAGAGGTTTTTCAAGTATTTGGCAACAAGAAACCAGATTTTGATGGGCTCGTTCACCTAAAAGTTGTCACCATGATTTTATATGAGGTTCTGAGGTTATACCCACCAGTACCTGTGATGACTCGAACTGTTCAGAAAGAAACACAGCTCGGAAATTTGTTACTCCCAGCTGGAGTGCAGTTGTCATTACCAATATTCCTGGTTCAGCAAGACGAACAACTGTGGGGTGAGGATGCAAAGGAATTCAACCCAGAGAGATTTTCAGAAGGAATTTCAAAGGCAACAAAGGGTCAGGTTTCATTTATCCCATTCGGATGGGGTCCTCGGATATGCATTGGACAAAACTTTGGTTTGATGGAAGCAAAAATGGCGTTGTCCTTGATATTACATAGCTTCACATTTGAGCTTTCCCCATCCTATACTCATGGTCCAATCACGGCTATAACGATTCGACCACAATATGGTGCACACATTATCTTGCAAAAACTGTAA

Protein Analysis

352

Amino Acids

39.97

Weight (kDa)

6.05

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 328 6.1e-72 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1028
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 4 cut(s) 405, 721, 809, 837
AfaI GTAC 2 cut(s) 195, 678
AfiI CCNNNNNNNGG 1 cut(s) 1028
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 8 cut(s) 104, 176, 262, 307, 449, 581, 814, 843
AjnI CCWGG 2 cut(s) 232, 765
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AluBI AGCT 6 cut(s) 24, 472, 715, 737, 960, 973
AluI AGCT 6 cut(s) 24, 472, 715, 737, 960, 973
Alw21I GWGCWC 1 cut(s) 1036
Alw26I GTCTC 1 cut(s) 488
Alw44I GTGCAC 1 cut(s) 1032
AlwI GGATC 1 cut(s) 79
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 1 cut(s) 92
ApaLI GTGCAC 1 cut(s) 1032
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 4 cut(s) 405, 721, 809, 837
AspS9I GGNCC 2 cut(s) 887, 995
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 4 cut(s) 359, 614, 628, 806
AvaII GGWCC 2 cut(s) 887, 995
BaeGI GKGCMC 1 cut(s) 1036
BanII GRGCYC 1 cut(s) 618
BauI CACGAG 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 1036
BbvI GCAGC 1 cut(s) 11
BccI CCATC 4 cut(s) 605, 876, 916, 988
BceAI ACGGC 1 cut(s) 1020
BciT130I CCWGG 2 cut(s) 234, 767
BciVI GTATCC 1 cut(s) 372
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 535
BfrI CTTAAG 1 cut(s) 202
BfuI GTATCC 1 cut(s) 372
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 3 cut(s) 234, 487, 767
Bme18I GGWCC 2 cut(s) 887, 995
BmgT120I GGNCC 2 cut(s) 887, 995
BmiI GGNNCC 1 cut(s) 888
BmrFI CCNGG 3 cut(s) 234, 487, 767
BmsI GCATC 1 cut(s) 790
BplI GAGNNNNNCTC 2 cut(s) 485, 517
BpmI CTGGAG 2 cut(s) 164, 759
BpuMI CCSGG 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 486, 890
Bsc4I CCNNNNNNNGG 1 cut(s) 1028
Bse1I ACTGG 2 cut(s) 349, 674
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 2 cut(s) 234, 767
BseDI CCNNGG 2 cut(s) 486, 890
BseGI GGATG 4 cut(s) 276, 805, 887, 980
BseLI CCNNNNNNNGG 1 cut(s) 1028
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 2 cut(s) 349, 674
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 1036
BseXI GCAGC 1 cut(s) 11
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 2 cut(s) 10, 764
BshFI GGCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 1036
BsiSI CCGG 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 1028
BsmAI GTCTC 1 cut(s) 488
BsnI GGCC 1 cut(s) 94
Bsp1286I GDGCHC 2 cut(s) 618, 1036
Bsp143I GATC 2 cut(s) 51, 71
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 651
BspLI GGNNCC 1 cut(s) 888
BspPI GGATC 1 cut(s) 79
BspTI CTTAAG 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 2 cut(s) 349, 674
BssECI CCNNGG 2 cut(s) 486, 890
BssMI GATC 2 cut(s) 51, 71
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 234, 767
Bst4CI ACNGT 4 cut(s) 414, 697, 789, 1056
Bst6I CTCTTC 2 cut(s) 444, 564
BstAFI CTTAAG 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 9, 555
BstDEI CTNAG 2 cut(s) 360, 659
BstF5I GGATG 4 cut(s) 276, 805, 887, 980
BstKTI GATC 2 cut(s) 54, 74
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 2 cut(s) 51, 71
BstMWI GCNNNNNNNGC 1 cut(s) 935
BstNI CCWGG 2 cut(s) 234, 767
BstSCI CCNGG 3 cut(s) 232, 485, 765
BstSFI CTRYAG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 1036
BstV1I GCAGC 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 882
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 4 cut(s) 276, 805, 887, 980
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 9, 555
CaiI CAGNNNCTG 1 cut(s) 680
Cfr13I GGNCC 2 cut(s) 887, 995
Csp6I GTAC 2 cut(s) 194, 677
CviAII CATG 4 cut(s) 55, 75, 640, 992
CviQI GTAC 2 cut(s) 194, 677
DdeI CTNAG 2 cut(s) 360, 659
DpnI GATC 2 cut(s) 53, 73
DpnII GATC 2 cut(s) 51, 71
Eam1104I CTCTTC 2 cut(s) 444, 564
EarI CTCTTC 2 cut(s) 444, 564
Eco24I GRGCYC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 887, 995
EcoO109I RGGNCCY 1 cut(s) 887
EcoRI GAATTC 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 232, 765
EcoRV GATATC 1 cut(s) 542
EcoT22I ATGCAT 1 cut(s) 902
EcoT38I GRGCYC 1 cut(s) 618
FaeI CATG 4 cut(s) 58, 78, 643, 995
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FatI CATG 4 cut(s) 54, 74, 639, 991
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 4 cut(s) 283, 812, 894, 967
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 25
GsaI CCCAGC 1 cut(s) 737
GsuI CTGGAG 2 cut(s) 164, 759
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 486
Hin1II CATG 4 cut(s) 58, 78, 643, 995
HinfI GANTC 4 cut(s) 389, 526, 688, 1015
HpaII CCGG 1 cut(s) 486
HphI GGTGA 4 cut(s) 359, 614, 628, 806
Hpy166II GTNNAC 2 cut(s) 622, 1034
Hpy188I TCNGA 6 cut(s) 660, 702, 719, 832, 881, 894
Hpy188III TCNNGA 2 cut(s) 181, 386
Hpy8I GTNNAC 2 cut(s) 622, 1034
HpyAV CCTTC 5 cut(s) 58, 110, 152, 268, 827
HpyCH4III ACNGT 4 cut(s) 414, 697, 789, 1056
HpyCH4V TGCA 6 cut(s) 27, 745, 803, 900, 1034, 1048
HpyF10VI GCNNNNNNNGC 1 cut(s) 935
HpyF3I CTNAG 2 cut(s) 360, 659
Hsp92II CATG 4 cut(s) 58, 78, 643, 995
Kzo9I GATC 2 cut(s) 51, 71
Lsp1109I GCAGC 1 cut(s) 11
LweI GCATC 1 cut(s) 790
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 634, 726
MalI GATC 2 cut(s) 53, 73
MboI GATC 2 cut(s) 51, 71
MboII GAAGA 3 cut(s) 167, 461, 581
MfeI CAATTG 2 cut(s) 43, 394
MhlI GDGCHC 2 cut(s) 618, 1036
MluCI AATT 9 cut(s) 43, 80, 279, 394, 405, 547, 721, 809, 837
MlyI GAGTC 1 cut(s) 682
MmeI TCCRAC 2 cut(s) 415, 439
Mph1103I ATGCAT 1 cut(s) 902
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 2 cut(s) 32, 880
MspA1I CMGCKG 1 cut(s) 737
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 1 cut(s) 486
MspR9I CCNGG 3 cut(s) 234, 487, 767
MunI CAATTG 2 cut(s) 43, 394
MvaI CCWGG 2 cut(s) 234, 767
MwoI GCNNNNNNNGC 1 cut(s) 935
NciI CCSGG 1 cut(s) 487
NdeII GATC 2 cut(s) 51, 71
NlaIII CATG 4 cut(s) 58, 78, 643, 995
NlaIV GGNNCC 1 cut(s) 888
NmuCI GTSAC 1 cut(s) 634
NsiI ATGCAT 1 cut(s) 902
PcsI WCGNNNNNNNCGW 1 cut(s) 1010
PfeI GAWTC 3 cut(s) 389, 526, 1015
PflMI CCANNNNNTGG 1 cut(s) 1028
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PpuMI RGGWCCY 1 cut(s) 887
Psp5II RGGWCCY 1 cut(s) 887
Psp6I CCWGG 2 cut(s) 232, 765
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 2 cut(s) 232, 765
PspN4I GGNNCC 1 cut(s) 888
PspPI GGNCC 2 cut(s) 887, 995
PspPPI RGGWCCY 1 cut(s) 887
PstNI CAGNNNCTG 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 195, 678
RsaNI GTAC 2 cut(s) 194, 677
RseI CAYNNNNRTG 2 cut(s) 32, 880
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 2 cut(s) 51, 71
Sau96I GGNCC 2 cut(s) 887, 995
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 3 cut(s) 234, 487, 767
SduI GDGCHC 2 cut(s) 618, 1036
SfaNI GCATC 1 cut(s) 790
SfcI CTRYAG 1 cut(s) 535
SinI GGWCC 2 cut(s) 887, 995
SmiMI CAYNNNNRTG 2 cut(s) 32, 880
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 9 cut(s) 43, 80, 279, 394, 405, 547, 721, 809, 837
SspI AATATT 2 cut(s) 171, 762
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 3 cut(s) 232, 485, 765
TaaI ACNGT 4 cut(s) 414, 697, 789, 1056
TaqI TCGA 4 cut(s) 62, 409, 691, 1018
TasI AATT 9 cut(s) 43, 80, 279, 394, 405, 547, 721, 809, 837
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 3 cut(s) 389, 526, 1015
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 7 cut(s) 168, 208, 217, 287, 353, 366, 855
TspRI CASTG 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 1028
Vha464I CTTAAG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 1032
VpaK11BI GGWCC 2 cut(s) 887, 995
XapI RAATTY 4 cut(s) 405, 721, 809, 837
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.