Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

10498588 .. 10501015

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCAAATGGAAGTGTCATTAGGCAGCATAGCAGTATCGATTGTTTTGTTGATTATAGCTTCATCATGGGCATGGAGGGTGCTGAATTGGGTGTGGTTGAAGCCAAAGAAGCTAGAAAACTGTCTGAGGCAGCAAGGTCTTGCCGGAAACTCGTACCGCCTTTTGATTGGCGATCTTAAGGAGAACATCAAGGTGATGAAGGAAGCCACTTCAAAACCCATGAACCTCTCCGATGATGTAGCCCCGCGTGTCCTGCCATTTCTCCATCAAACCATTAACAAACATGGTAAGAACTCTTTCATGTGGTTTGGTACTACACCAAGGGTGACCATCATGAATCCAGACTATTTGAAAGATATATTCACAAAATACGATGATTTTCAGAAGCCAGATACTAGTCCTGTTGTCAAGTTGCTGTCATACGGTCTTGTAAACCTTGAGGGAGAAAAATGGGTTAAACGGAGAAAGCTTATTAACCCAGCATTCCATATTGAGAAGCTAAAGGTTTCTACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

172

Amino Acids

19.78

Weight (kDa)

9.77

Isoelectric Point (pI)

20.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	88 - 167	2.6e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	247
AciI	CCGC	2 cut(s)	157, 245
AfaI	GTAC	2 cut(s)	155, 313
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	100, 213, 352
AhlI	ACTAGT	1 cut(s)	395
AluBI	AGCT	4 cut(s)	59, 112, 469, 499
AluI	AGCT	4 cut(s)	59, 112, 469, 499
ApeKI	GCWGC	2 cut(s)	24, 130
Asp700I	GAANNNNTTC	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	205, 337
BbvI	GCAGC	2 cut(s)	36, 142
BccI	CCATC	2 cut(s)	273, 338
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	113, 396
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	2 cut(s)	25, 131
BlsI	GCNGC	2 cut(s)	26, 132
BpuEI	CTTGAG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	36, 142
BseYI	CCCAGC	1 cut(s)	478
Bsh1236I	CGCG	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	482
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	2 cut(s)	157, 245
BspCNI	CTCAG	1 cut(s)	117
BspDI	ATCGAT	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	122, 425
BstAFI	CTTAAG	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 253
BstPI	GGTNACC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	36, 142
Bsu15I	ATCGAT	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	38
CciI	TCATGA	1 cut(s)	333
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	154, 312
CviAII	CATG	6 cut(s)	66, 72, 220, 284, 301, 334
CviJI	RGCY	8 cut(s)	59, 103, 112, 206, 242, 388, 469, 499
CviKI_1	RGCY	8 cut(s)	59, 103, 112, 206, 242, 388, 469, 499
CviQI	GTAC	2 cut(s)	154, 312
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	6 cut(s)	69, 75, 223, 287, 304, 337
FatI	CATG	6 cut(s)	65, 71, 219, 283, 300, 333
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	25, 131
Fsp4HI	GCNGC	2 cut(s)	25, 131
FspBI	CTAG	2 cut(s)	113, 396
GluI	GCNGC	2 cut(s)	25, 131
GsaI	CCCAGC	1 cut(s)	482
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	6 cut(s)	69, 75, 223, 287, 304, 337
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	205, 337
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	126, 232, 384
Hpy188III	TCNNGA	2 cut(s)	334, 341
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	122, 425
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 253
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	6 cut(s)	69, 75, 223, 287, 304, 337
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	157, 266, 354, 402, 414, 492
Lsp1109I	GCAGC	2 cut(s)	36, 142
MaeI	CTAG	2 cut(s)	113, 396
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	4 cut(s)	69, 120, 236, 433
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	4 cut(s)	177, 276, 456, 474
MslI	CAYNNNNRTG	2 cut(s)	70, 191
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	482
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	109, 253
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	6 cut(s)	69, 75, 223, 287, 304, 337
NmuCI	GTSAC	1 cut(s)	325
PagI	TCATGA	1 cut(s)	333
PctI	GAATGC	1 cut(s)	482
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	26, 132
PspEI	GGTNACC	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	478
RsaI	GTAC	2 cut(s)	155, 313
RsaNI	GTAC	2 cut(s)	154, 312
RseI	CAYNNNNRTG	2 cut(s)	70, 191
SaqAI	TTAA	4 cut(s)	177, 276, 456, 474
SatI	GCNGC	2 cut(s)	25, 131
Sau3AI	GATC	1 cut(s)	172
SetI	ASST	9 cut(s)	61, 114, 139, 195, 228, 438, 471, 501, 507
SmiMI	CAYNNNNRTG	2 cut(s)	70, 191
SmlI	CTYRAG	2 cut(s)	176, 437
SmoI	CTYRAG	2 cut(s)	176, 437
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	157, 245
SspMI	CTAG	2 cut(s)	113, 396
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	2 cut(s)	122, 425
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	4 cut(s)	177, 276, 456, 474
Tru9I	TTAA	4 cut(s)	177, 276, 456, 474
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	24, 130
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	5 cut(s)	51, 212, 236, 289, 350
TspGWI	ACGGA	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	2 cut(s)	113, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.