Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

71713971 .. 71715565

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAGTCTATCATGAAGTCTATCATACAAGTATCGCTGTATCGATGGAGACAGAATATGGAAGTAACACTGGCTAGTTGGATATCGCTGAGCCTTGTTTTGGTTAGCATAATACTGAGATGGGCATGGAGTGTGCTGGATTGGGTTTGGCTGAAGCCGAAGAAACTAGAAAGATGTTTGAGGGAGCAAGGCCTTCAAGGCAATTCCTACAAGTTCTTGTATGGAGATGTGAAGGAGAACTCTATCCTGCTAAAACATGCAAAATCCAAACCCATGAACCTCTCCACCTGCCATGACATAGCACCACGACTCATTCCTTTTCTCGATCAAACCGTAAAAACTTATGAACTCTTTGTTTGGAGTGGCCCCTTACCAAGGGTGACCATTATGAATGGTGAAGATGTGAAAGATGTCTTCACAAAACTTGATGATTTTCTTAAGCCAGTATCAAACCCACTCCTCAATTTCCTAACAACGGGTCTTCTAAGCTATGAAGGTGAGAAATGGGCTAAGCGTAGGAGGATTATCAACCCAACATTCCATGTAGCAAAACTAAAGCAAATGTTACCCGCCTTTCACATAAGTTGTGATGAGATGATTAAGGAATGGGAGAGCTTGGCTTCCAAAGAGGGCTCATCATGTCTGTTGGATGTTTGGCCATCTCTACAACACTTGACGGCTGATGTAATTTCTCGAACAGCATTTGGAAGTAGCTATCAGGAAGGAAGGAAAATGTTTGAACTCCTCAAAGAGCAAGTAATGCTTGTAATGAATGCCATACAAAGTGTGTACATACCAGGATGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

269

Amino Acids

31.2

Weight (kDa)

9.34

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	119 - 252	1.1e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
AciI	CCGC	1 cut(s)	570
AcoI	YGGCCR	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	3 cut(s)	100, 375, 475
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	197, 740
AjnI	CCWGG	1 cut(s)	796
AluBI	AGCT	3 cut(s)	489, 615, 714
AluI	AGCT	3 cut(s)	489, 615, 714
Alw26I	GTCTC	1 cut(s)	43
AoxI	GGCC	3 cut(s)	190, 364, 656
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	391, 407, 509
BalI	TGGCCA	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	635
BbsI	GAAGAC	2 cut(s)	406, 473
BccI	CCATC	4 cut(s)	39, 114, 667, 795
BceAI	ACGGC	1 cut(s)	693
BciT130I	CCWGG	1 cut(s)	798
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	75, 167
BfrI	CTTAAG	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	198
BlpI	GCTNAGC	2 cut(s)	89, 510
Bme1390I	CCNGG	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	798
BpiI	GAAGAC	2 cut(s)	406, 473
Bpu1102I	GCTNAGC	2 cut(s)	89, 510
Bsa29I	ATCGAT	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 375, 475
Bse1I	ACTGG	2 cut(s)	75, 443
BseBI	CCWGG	1 cut(s)	798
BseCI	ATCGAT	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	2 cut(s)	655, 806
BseLI	CCNNNNNNNGG	3 cut(s)	100, 375, 475
BseMII	CTCAG	2 cut(s)	80, 107
BseNI	ACTGG	2 cut(s)	75, 443
BseRI	GAGGAG	2 cut(s)	449, 734
BshFI	GGCC	3 cut(s)	192, 366, 658
BshVI	ATCGAT	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	100, 375, 475
BsmAI	GTCTC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	3 cut(s)	192, 366, 658
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	1 cut(s)	325
Bsp1720I	GCTNAGC	2 cut(s)	89, 510
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	3 cut(s)	192, 366, 658
BspCNI	CTCAG	2 cut(s)	81, 108
BspDI	ATCGAT	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	296
BspTI	CTTAAG	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	75, 443
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	1 cut(s)	334
BstAFI	CTTAAG	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	760
BstAUI	TGTACA	1 cut(s)	789
BstDEI	CTNAG	4 cut(s)	89, 116, 485, 510
BstEII	GGTNACC	1 cut(s)	379
BstENI	CCTNNNNNAGG	1 cut(s)	373
BstF5I	GGATG	2 cut(s)	655, 806
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 760
BstNI	CCWGG	1 cut(s)	798
BstNSI	RCATGY	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	796
BstV2I	GAAGAC	2 cut(s)	406, 473
Bsu15I	ATCGAT	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	192, 366, 658
BsuTUI	ATCGAT	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	655, 806
BtsIMutI	CAGTG	1 cut(s)	68
BveI	ACCTGC	1 cut(s)	296
CciI	TCATGA	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	7 cut(s)	13, 126, 257, 274, 293, 542, 639
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	4 cut(s)	89, 116, 485, 510
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	656
Eco130I	CCWWGG	1 cut(s)	374
Eco147I	AGGCCT	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	635
Eco32I	GATATC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	379
EcoNI	CCTNNNNNAGG	1 cut(s)	373
EcoO65I	GGTNACC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	796
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	7 cut(s)	16, 129, 260, 277, 296, 545, 642
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FatI	CATG	7 cut(s)	12, 125, 256, 273, 292, 541, 638
FauI	CCCGC	1 cut(s)	577
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	1 cut(s)	635
FspBI	CTAG	2 cut(s)	75, 167
HaeIII	GGCC	3 cut(s)	192, 366, 658
Hin1II	CATG	7 cut(s)	16, 129, 260, 277, 296, 545, 642
HinfI	GANTC	1 cut(s)	309
HphI	GGTGA	3 cut(s)	391, 407, 509
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188III	TCNNGA	4 cut(s)	13, 323, 693, 719
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	5 cut(s)	203, 226, 488, 716, 720
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 760
HpyF3I	CTNAG	4 cut(s)	89, 116, 485, 510
Hsp92II	CATG	7 cut(s)	16, 129, 260, 277, 296, 545, 642
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	7 cut(s)	56, 122, 260, 301, 456, 704, 783
MaeI	CTAG	2 cut(s)	75, 167
MaeIII	GTNAC	3 cut(s)	64, 379, 564
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	172, 406, 410, 473
MhlI	GDGCHC	1 cut(s)	635
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	3 cut(s)	202, 463, 687
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	59, 627
MnlI	CCTC	7 cut(s)	174, 290, 470, 513, 622, 755, 798
Mox20I	TGGCCA	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	2 cut(s)	438, 600
Msp20I	TGGCCA	1 cut(s)	658
MspCI	CTTAAG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	1 cut(s)	798
MwoI	GCNNNNNNNGC	2 cut(s)	198, 760
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	7 cut(s)	16, 129, 260, 277, 296, 545, 642
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	260
PagI	TCATGA	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PctI	GAATGC	1 cut(s)	778
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	796
PspEI	GGTNACC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	796
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
SaqAI	TTAA	2 cut(s)	438, 600
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	798
SduI	GDGCHC	1 cut(s)	635
SetI	ASST	7 cut(s)	282, 290, 491, 499, 617, 716, 809
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	202, 463, 687
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	2 cut(s)	75, 167
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	796
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	3 cut(s)	43, 324, 694
TasI	AATT	3 cut(s)	202, 463, 687
TatI	WGTACW	1 cut(s)	789
Tru1I	TTAA	2 cut(s)	438, 600
Tru9I	TTAA	2 cut(s)	438, 600
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	7 cut(s)	17, 29, 290, 360, 404, 507, 785
TspRI	CASTG	1 cut(s)	75
Vha464I	CTTAAG	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	373
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	2 cut(s)	75, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.