Rh6CG523400

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
67849885 .. 67851979
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG523400.1

Sequence Viewer

Length: 927 bp
ATGGAAGACTATCATACTTTTAACACTTTGATCTTCTCTTTGGTTTCACTGATTGTTTATTCTGCTCTGAGAGTCATCAATGTGTATTGGTGGAGACCCAGAAGCTTAGAGAAGCAGTTAAGAAAGCAAGGGATCAGAGGAAGATCTTACAGGCTTTTCCAGGATGACATGAAAGAGATCAGTAGCTCCAACATGGAAGCTTGGTCCAAACCCATGTCCCTCAACCACCAGATTGCCCCACGTGTCTTCCCATTCTTCTATCAAATGGTTCAAAACTATGGGAAAGTGAGTCTGTGTTGGATTGGAACAAGGCCAAGGCTAGTAATAGCTGACCCGGAGATGATCAAGTCGATATTAGCAGACAAGAATGGACATATTATAAAGCCACCACTGAACCCACTTGTCAATCTTCTGCAACTCGGAGTTACAACCTTGGAGGGAGAGCAATGGGCCAAGCGCAGAAGGCTCATTAGCCCCGCCTTCCACCTCGAGAAATTAAAGGTATCAATGATATTAAACGAAGTTCTGAGGCTATATTCAACAGTGAGTGCACTCTATAGGCACACCAACCAGAAAACCAACATAGGAGGCATTTCAGTCCCAGCTGGGGTTGAATTTGTGTTGCTCACTCTGTTTCTTCAACATGACCCCAAATACTGGGGTGAAATCGTTGAGGAATTCAACCCGGAGAGATTTGCCGAAGGAGTTGCAAAAGCATCAAAGGATCAAATGGCGTTCTATCCATTTGGTTGGGGACCAAGAATATGTCTAGGCCAAACATTTGCTGTGATAGAAGCAAAGATGGCCCTGGCTATGATTCTTCAACGTTTTTGGTTCGAGCTCTCAAGCTCATACACTCATGCTCCTGTTATAGGCATTACCGTTCAGCCTCAACATGGAGCCCCAGTTATCCTTCATAGAATTTAA

Protein Analysis

308

Amino Acids

35.46

Weight (kDa)

9.65

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 83 - 166 5.7e-09 Cytochrome P450
p450 PF00067 169 - 282 6.5e-31 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 657
AciI CCGC 1 cut(s) 477
AclI AACGTT 1 cut(s) 826
AclWI GGATC 2 cut(s) 140, 732
AcsI RAATTY 3 cut(s) 614, 677, 921
AcvI CACGTG 1 cut(s) 242
AfiI CCNNNNNNNGG 4 cut(s) 607, 657, 872, 896
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 6 cut(s) 272, 540, 614, 641, 682, 824
AjnI CCWGG 2 cut(s) 159, 807
AluBI AGCT 7 cut(s) 105, 186, 200, 329, 605, 841, 849
AluI AGCT 7 cut(s) 105, 186, 200, 329, 605, 841, 849
Alw21I GWGCWC 2 cut(s) 553, 843
Alw26I GTCTC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 549
AlwI GGATC 2 cut(s) 140, 732
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 4 cut(s) 311, 450, 772, 804
ApaLI GTGCAC 1 cut(s) 549
ApoI RAATTY 3 cut(s) 614, 677, 921
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 4 cut(s) 204, 450, 755, 805
AsuC2I CCSGG 2 cut(s) 335, 686
AsuHPI GGTGA 1 cut(s) 674
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 2 cut(s) 204, 755
BaeGI GKGCMC 1 cut(s) 553
BanII GRGCYC 2 cut(s) 843, 904
BbrPI CACGTG 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 12, 238
Bbv12I GWGCWC 2 cut(s) 553, 843
BccI CCATC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 2 cut(s) 161, 809
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 2 cut(s) 335, 686
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 320, 770
BfmI CTRYAG 1 cut(s) 556
BglII AGATCT 1 cut(s) 143
Bme1390I CCNGG 4 cut(s) 161, 335, 686, 809
Bme18I GGWCC 2 cut(s) 204, 755
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 4 cut(s) 204, 450, 755, 805
BmiI GGNNCC 2 cut(s) 756, 901
BmrFI CCNGG 4 cut(s) 161, 335, 686, 809
BmrI ACTGGG 2 cut(s) 667, 899
BmsI GCATC 1 cut(s) 725
BmuI ACTGGG 2 cut(s) 667, 899
BpiI GAAGAC 2 cut(s) 12, 238
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 2 cut(s) 335, 686
BsaAI YACGTR 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 314, 432, 807
BsaXI ACNNNNNCTCC 4 cut(s) 847, 877, 891, 921
Bsc4I CCNNNNNNNGG 4 cut(s) 607, 657, 872, 896
Bse1I ACTGG 2 cut(s) 662, 905
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 2 cut(s) 161, 809
BseDI CCNNGG 3 cut(s) 314, 432, 807
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 4 cut(s) 607, 657, 872, 896
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 59, 518
BseNI ACTGG 2 cut(s) 662, 905
BseSI GKGCMC 1 cut(s) 553
BseYI CCCAGC 2 cut(s) 601, 605
BshFI GGCC 4 cut(s) 313, 452, 774, 806
BsiHKAI GWGCWC 2 cut(s) 553, 843
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 2 cut(s) 335, 686
BslFI GGGAC 3 cut(s) 202, 584, 768
BslI CCNNNNNNNGG 4 cut(s) 607, 657, 872, 896
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 3 cut(s) 202, 584, 768
BsnI GGCC 4 cut(s) 313, 452, 774, 806
Bso31I GGTCTC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 553, 843, 904
Bsp143I GATC 6 cut(s) 30, 132, 143, 177, 342, 724
BspACI CCGC 1 cut(s) 477
BspANI GGCC 4 cut(s) 313, 452, 774, 806
BspCNI CTCAG 2 cut(s) 60, 519
BspLI GGNNCC 2 cut(s) 756, 901
BspPI GGATC 2 cut(s) 140, 732
BspTNI GGTCTC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 2 cut(s) 662, 905
BssECI CCNNGG 3 cut(s) 314, 432, 807
BssMI GATC 6 cut(s) 30, 132, 143, 177, 342, 724
BssT1I CCWWGG 2 cut(s) 314, 432
Bst2UI CCWGG 2 cut(s) 161, 809
Bst4CI ACNGT 2 cut(s) 544, 883
BstBAI YACGTR 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 68, 106, 527
BstENI CCTNNNNNAGG 1 cut(s) 870
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 6 cut(s) 33, 135, 146, 180, 345, 727
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 6 cut(s) 30, 132, 143, 177, 342, 724
BstMWI GCNNNNNNNGC 2 cut(s) 463, 803
BstNI CCWGG 2 cut(s) 161, 809
BstSCI CCNGG 4 cut(s) 159, 333, 684, 807
BstSFI CTRYAG 1 cut(s) 556
BstSLI GKGCMC 1 cut(s) 553
BstV2I GAAGAC 2 cut(s) 12, 238
BstX2I RGATCY 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 750
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 4 cut(s) 313, 452, 774, 806
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 3 cut(s) 47, 389, 549
CfoI GCGC 1 cut(s) 459
Cfr13I GGNCC 4 cut(s) 204, 450, 755, 805
CviAII CATG 6 cut(s) 169, 193, 214, 644, 860, 896
DdeI CTNAG 3 cut(s) 68, 106, 527
DpnI GATC 6 cut(s) 32, 134, 145, 179, 344, 726
DpnII GATC 6 cut(s) 30, 132, 143, 177, 342, 724
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 314, 432
Eco24I GRGCYC 2 cut(s) 843, 904
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 204, 755
Eco53kI GAGCTC 1 cut(s) 841
Eco72I CACGTG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 841
EcoNI CCTNNNNNAGG 1 cut(s) 870
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 2 cut(s) 159, 807
EcoT14I CCWWGG 2 cut(s) 314, 432
EcoT38I GRGCYC 2 cut(s) 843, 904
ErhI CCWWGG 2 cut(s) 314, 432
FaeI CATG 6 cut(s) 172, 196, 217, 647, 863, 899
FaqI GGGAC 3 cut(s) 202, 584, 768
FatI CATG 6 cut(s) 168, 192, 213, 643, 859, 895
FauI CCCGC 1 cut(s) 484
FbaI TGATCA 1 cut(s) 342
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 2 cut(s) 843, 904
FspBI CTAG 2 cut(s) 320, 770
GlaI GCGC 1 cut(s) 458
GsaI CCCAGC 2 cut(s) 605, 609
HaeIII GGCC 4 cut(s) 313, 452, 774, 806
HapII CCGG 2 cut(s) 335, 686
HhaI GCGC 1 cut(s) 459
Hin1II CATG 6 cut(s) 172, 196, 217, 647, 863, 899
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HindIII AAGCTT 2 cut(s) 103, 198
HinfI GANTC 3 cut(s) 72, 289, 817
HpaII CCGG 2 cut(s) 335, 686
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 4 cut(s) 69, 137, 422, 528
Hpy188III TCNNGA 1 cut(s) 490
Hpy8I GTNNAC 1 cut(s) 551
HpyAV CCTTC 4 cut(s) 456, 490, 695, 923
HpyCH4III ACNGT 2 cut(s) 544, 883
HpyCH4IV ACGT 2 cut(s) 241, 826
HpyCH4V TGCA 3 cut(s) 415, 551, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 463, 803
HpyF3I CTNAG 3 cut(s) 68, 106, 527
HpySE526I ACGT 2 cut(s) 241, 826
Hsp92II CATG 6 cut(s) 172, 196, 217, 647, 863, 899
HspAI GCGC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 6 cut(s) 30, 132, 143, 177, 342, 724
LmnI GCTCC 3 cut(s) 191, 868, 899
LweI GCATC 1 cut(s) 725
MaeI CTAG 2 cut(s) 320, 770
MaeII ACGT 2 cut(s) 241, 826
MaeIII GTNAC 1 cut(s) 424
MalI GATC 6 cut(s) 32, 134, 145, 179, 344, 726
MboI GATC 6 cut(s) 30, 132, 143, 177, 342, 724
MboII GAAGA 8 cut(s) 17, 25, 153, 238, 247, 401, 629, 812
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 3 cut(s) 553, 843, 904
MluCI AATT 4 cut(s) 494, 614, 677, 921
MlyI GAGTC 2 cut(s) 81, 298
MmeI TCCRAC 2 cut(s) 213, 278
MnlI CCTC 8 cut(s) 131, 230, 430, 497, 522, 581, 667, 900
MseI TTAA 5 cut(s) 21, 119, 497, 515, 925
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 2 cut(s) 335, 686
MspR9I CCNGG 4 cut(s) 161, 335, 686, 809
MvaI CCWGG 2 cut(s) 161, 809
MwoI GCNNNNNNNGC 2 cut(s) 463, 803
NciI CCSGG 2 cut(s) 335, 686
NdeII GATC 6 cut(s) 30, 132, 143, 177, 342, 724
NlaIII CATG 6 cut(s) 172, 196, 217, 647, 863, 899
NlaIV GGNNCC 2 cut(s) 756, 901
PaeR7I CTCGAG 1 cut(s) 488
PfeI GAWTC 1 cut(s) 817
PflMI CCANNNNNTGG 1 cut(s) 657
PfoI TCCNGGA 1 cut(s) 159
PleI GAGTC 2 cut(s) 80, 297
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
PpsI GAGTC 2 cut(s) 80, 297
Ppu21I YACGTR 1 cut(s) 242
PsiI TTATAA 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 826
Psp6I CCWGG 2 cut(s) 159, 807
PspCI CACGTG 1 cut(s) 242
PspFI CCCAGC 2 cut(s) 601, 605
PspGI CCWGG 2 cut(s) 159, 807
PspN4I GGNNCC 2 cut(s) 756, 901
PspPI GGNCC 4 cut(s) 204, 450, 755, 805
PsuI RGATCY 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 605
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 843
SaqAI TTAA 5 cut(s) 21, 119, 497, 515, 925
Sau3AI GATC 6 cut(s) 30, 132, 143, 177, 342, 724
Sau96I GGNCC 4 cut(s) 204, 450, 755, 805
SchI GAGTC 2 cut(s) 81, 298
ScrFI CCNGG 4 cut(s) 161, 335, 686, 809
SduI GDGCHC 3 cut(s) 553, 843, 904
SfaNI GCATC 1 cut(s) 725
SfcI CTRYAG 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 488
SinI GGWCC 2 cut(s) 204, 755
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 488, 844
SmoI CTYRAG 2 cut(s) 488, 844
Sse9I AATT 4 cut(s) 494, 614, 677, 921
SsiI CCGC 1 cut(s) 477
SspMI CTAG 2 cut(s) 320, 770
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 4 cut(s) 159, 333, 684, 807
StyI CCWWGG 2 cut(s) 314, 432
TaaI ACNGT 2 cut(s) 544, 883
TaiI ACGT 2 cut(s) 244, 829
TaqI TCGA 3 cut(s) 350, 489, 837
TasI AATT 4 cut(s) 494, 614, 677, 921
TfiI GAWTC 1 cut(s) 817
Tru1I TTAA 5 cut(s) 21, 119, 497, 515, 925
Tru9I TTAA 5 cut(s) 21, 119, 497, 515, 925
TscAI CASTG 3 cut(s) 54, 396, 549
TspDTI ATGAA 2 cut(s) 185, 905
TspRI CASTG 3 cut(s) 54, 396, 549
Van91I CCANNNNNTGG 1 cut(s) 657
VneI GTGCAC 1 cut(s) 549
VpaK11BI GGWCC 2 cut(s) 204, 755
XagI CCTNNNNNAGG 1 cut(s) 870
XapI RAATTY 3 cut(s) 614, 677, 921
XhoI CTCGAG 1 cut(s) 488
XspI CTAG 2 cut(s) 320, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.