Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

9834007 .. 9836328

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGCTTCTCAAATCCCTACACTTTCCCGCCACCAAAACCAGACGAGCCTTCAGCACACTCCCATCTCTCTTAAACCTCTGCACACAACCCAAAACCCTCCACCAACTCCACGCAAGGTACATCCTTCACGGCCTCCACCAAGACCCACATCTCTCCTCCCAACTCATCCACCGCTATGCCGACCTCGGCCTCCCCTCTCTCTCCCGCCAAGTCCTCAACTCCATCGCCGACCCGACTCCGCTCCATTACACCCCAATCTTGAGAACCTTGTCAAGTTCAGGTGAATTCGAGAGCACCCTTTTGGTTTACGATGAAATGGTGATGAAGGGTATGTACCCAGATGGGGATACATACCCTTCTGTGCTGAGGTCGTGTTCTCGCTTTTCGGATGCGCGAATTGGAGCAAGGGTTCATGGGCATGTGGTGAAACTGGGTTTTGATTCGTGTCATCTATTGGGTTATGCTTTGGTTGATATGTATAGAAACTATGGTGATTTTGAAAATGAAGGTAAGGTGTTTGATGAAATGCCTGTGCGTAGATTTGATTCGGTTACTGTGGTTAACTGGTTGAGGTTGAGTGTGGATTTGAACTCGTTGAAGGCGGGAAGGGCTGTGCATTGTGTGGCTGTTGTGACCAATTTGTGTGGGGATTTGTCTGTGAATACTGCATTGTTGTCTATGTATGCCAAGTTGGGTGAGTTGGACAGTGCGGAGTTGGTGTTTGATGAAATGCCTGAGAGGGATTGTGTTGTTTGGAATATAATGATATCGGCGTATTCGCGAAATGGGAAACCTAAGGAATCACTGGAGCTGTTGAGGTTCATGGGAAGATCAGGGGTTGGAGCTGATTTGTTTACGGCAATTCCTGCAATTTCTTCGATTGCAAGGTTAAGAGCTACCGAGTTGGGGAGACAAATGCATGCTCATGTGATAAGAAATGGTTCGGATTATCAAGTGTCGGTTCATAATTCTCTTATTGACATGTACTGTGAATGCAATCGTCTCAGTTATGCAAGAAAGATTTTTGACCTGGTGACAGACAAGACTGTGGTTTCGTGGAGTGCTATGATTAAAGGATATGTGACTCATGATCAGTCTCTTGAGGCTCTTACTCTCTTTTCGGAGATGAAATGTGATGGAGTCGGAGTTGATTTTATTACAGTCATCAACATTTTGCCTGCTTGTGTGAGTCTAGGAGCACTGGAGAATGTAAAATACTTTCATGGCTACTCGATGAAACTTAGCCTTAACTCGCTTTCATCTGTTAATACAGCATTTCTAGTCAGCTATGCAAAATGTGGATGCATAGAGATGGCCCGGAAGCTTTTTGATGAAGAGAACATCAATGAAAAAGATGTAATCACATGGAATTCTATGATTGGTGCATATGCGAAACATGGGGACTGGTATGGATCTTTCGAACTGTACAACCAAATGAAGGAATTGAGTATCAAACCAGATCAAGTAACCTTTCTAGGACTACTGACGGCCTGTGTAAATGCTGGTCTTGTTCAAGAAGGGAAGAAGTGTTTCAAGGAGATGATTGATATATATGGTTACAAACCGAGCCAGGAACACTATGCTTGTATGGCGGATCTACTAGGGCGTGCCGGGCAAGTGAATGAAGCAAGTGAACTCATAAAATCTATGCCTTTCAAACCCGATGCTCGGGTTTGGGGCCCTTTGTTAAGTGCTTGTAAGCTGCATTCAGACACAGGAGTTGCAGATTTTGCTGCTGAGAAGCTTATAACTATTGAACCAAACAATGCTGGAAATCTTATATTGCTTGCCAATATAAAGGCTGCAACTGGGAAGTGGGATGAAGTTGCTAAGATCAGGAGATCACTTAGGGATATGGGACTGAAGAAAACCCCAGGCTGTAGCTGGGTAGAGATAAATGGACGTCGACATGAGTTCCGAGTAGCGGATCGATCTCATCCAAGATCAGAAGGAATATATGCCATGTTAAGAAACCTGGAGTTGGAAAGCAAGGAAGCAAATATACAGATATATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

672

Amino Acids

75.15

Weight (kDa)

7.06

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	248 - 286	7.4e-06	PPR repeat family
PPR	PF01535	250 - 280	7.1e-08	PPR repeat
PPR_2	PF13041	349 - 392	1.3e-06	PPR repeat family
PPR	PF01535	351 - 381	3.1e-06	PPR repeat
PPR_2	PF13041	451 - 500	3.7e-13	PPR repeat family
PPR	PF01535	454 - 483	9e-08	PPR repeat
PPR_long	PF17177	462 - 618	2.5e-07	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	569 - 631	1.5e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1748
AatII	GACGTC	1 cut(s)	1906
AccBSI	CCGCTC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	1906
AccII	CGCG	2 cut(s)	394, 781
AciI	CCGC	8 cut(s)	27, 172, 205, 239, 602, 710, 1592, 1925
AclWI	GGATC	3 cut(s)	1420, 1602, 1935
AcsI	RAATTY	2 cut(s)	284, 1369
AcuI	CTGAAG	2 cut(s)	34, 1883
AcyI	GRCGYC	1 cut(s)	1903
AfaI	GTAC	4 cut(s)	119, 335, 986, 1427
AfiI	CCNNNNNNNGG	6 cut(s)	343, 906, 1438, 1668, 1924, 1981
AflIII	ACRYGT	1 cut(s)	981
AgsI	TTSAA	7 cut(s)	500, 589, 598, 1514, 1534, 1657, 1757
AjnI	CCWGG	4 cut(s)	1029, 1569, 1873, 1974
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
AluBI	AGCT	8 cut(s)	811, 845, 896, 1287, 1324, 1702, 1744, 1884
AluI	AGCT	8 cut(s)	811, 845, 896, 1287, 1324, 1702, 1744, 1884
Alw21I	GWGCWC	2 cut(s)	296, 1201
Alw26I	GTCTC	3 cut(s)	904, 1007, 1101
AlwI	GGATC	3 cut(s)	1420, 1602, 1935
Ama87I	CYCGRG	1 cut(s)	1668
AoxI	GGCC	5 cut(s)	130, 187, 1314, 1488, 1678
ApaI	GGGCCC	1 cut(s)	1682
ApeKI	GCWGC	3 cut(s)	1702, 1733, 1802
ApoI	RAATTY	2 cut(s)	284, 1369
ArsI	GACNNNNNNTTYG	2 cut(s)	1036, 1068
Asp700I	GAANNNNTTC	2 cut(s)	940, 1529
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	3 cut(s)	1315, 1678, 1679
AsuC2I	CCSGG	2 cut(s)	1318, 1612
AsuHPI	GGTGA	6 cut(s)	293, 331, 436, 503, 707, 1045
AsuII	TTCGAA	1 cut(s)	1419
AvaI	CYCGRG	1 cut(s)	1668
AxyI	CCTNAGG	1 cut(s)	795
BaeGI	GKGCMC	1 cut(s)	1682
BanII	GRGCYC	1 cut(s)	1682
BarI	GAAGNNNNNNTAC	4 cut(s)	317, 349, 1986, 2018
Bbv12I	GWGCWC	2 cut(s)	296, 1201
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	1689, 1720, 1789
BccI	CCATC	5 cut(s)	70, 230, 335, 1130, 1306
BceAI	ACGGC	3 cut(s)	145, 873, 1503
BcgI	CGANNNNNNTGC	2 cut(s)	858, 892
BciT130I	CCWGG	4 cut(s)	1031, 1571, 1875, 1976
BciVI	GTATCC	1 cut(s)	340
BclI	TGATCA	1 cut(s)	1090
BcnI	CCSGG	2 cut(s)	1318, 1612
BcoDI	GTCTC	3 cut(s)	904, 1007, 1101
BfaI	CTAG	4 cut(s)	1193, 1280, 1475, 1601
BfmI	CTRYAG	1 cut(s)	1879
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	1703, 1734, 1803
BlsI	GCNGC	3 cut(s)	1704, 1735, 1804
Bme1390I	CCNGG	6 cut(s)	1031, 1318, 1571, 1612, 1875, 1976
BmeT110I	CYCGRG	1 cut(s)	1668
BmgT120I	GGNCC	3 cut(s)	1315, 1678, 1679
BmiI	GGNNCC	2 cut(s)	1679, 1680
BmrFI	CCNGG	6 cut(s)	1031, 1318, 1571, 1612, 1875, 1976
BmrI	ACTGGG	2 cut(s)	440, 1818
BmsI	GCATC	3 cut(s)	379, 1292, 1654
BmuI	ACTGGG	2 cut(s)	440, 1818
BpmI	CTGGAG	3 cut(s)	827, 1223, 1997
Bpu10I	CCTNAGC	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	1419
BpuEI	CTTGAG	2 cut(s)	280, 1121
BpuMI	CCSGG	2 cut(s)	1318, 1612
Bsa29I	ATCGAT	1 cut(s)	1930
BsaHI	GRCGYC	1 cut(s)	1903
BsaJI	CCNNGG	2 cut(s)	184, 1873
BsaXI	ACNNNNNCTCC	6 cut(s)	393, 423, 704, 734, 1131, 1161
Bsc4I	CCNNNNNNNGG	6 cut(s)	343, 906, 1438, 1668, 1924, 1981
Bse1I	ACTGG	6 cut(s)	435, 569, 810, 1206, 1409, 1813
Bse21I	CCTNAGG	1 cut(s)	795
BseBI	CCWGG	4 cut(s)	1031, 1571, 1875, 1976
BseCI	ATCGAT	1 cut(s)	1930
BseDI	CCNNGG	2 cut(s)	184, 1873
BseGI	GGATG	6 cut(s)	120, 165, 394, 1307, 1825, 1936
BseLI	CCNNNNNNNGG	6 cut(s)	343, 906, 1438, 1668, 1924, 1981
BseMII	CTCAG	4 cut(s)	356, 726, 1018, 1728
BseNI	ACTGG	6 cut(s)	435, 569, 810, 1206, 1409, 1813
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	1682
BseXI	GCAGC	3 cut(s)	1689, 1720, 1789
BseYI	CCCAGC	1 cut(s)	1884
BsgI	GTGCAG	1 cut(s)	64
Bsh1236I	CGCG	2 cut(s)	394, 781
BshFI	GGCC	5 cut(s)	132, 189, 1316, 1490, 1680
BshVI	ATCGAT	1 cut(s)	1930
BsiHKAI	GWGCWC	2 cut(s)	296, 1201
BsiHKCI	CYCGRG	1 cut(s)	1668
BsiSI	CCGG	2 cut(s)	1318, 1611
BslFI	GGGAC	2 cut(s)	1415, 1872
BslI	CCNNNNNNNGG	6 cut(s)	343, 906, 1438, 1668, 1924, 1981
BsmAI	GTCTC	3 cut(s)	904, 1007, 1101
BsmBI	CGTCTC	1 cut(s)	1007
BsmFI	GGGAC	2 cut(s)	1415, 1872
BsmI	GAATGC	2 cut(s)	998, 1705
BsnI	GGCC	5 cut(s)	132, 189, 1316, 1490, 1680
BsoBI	CYCGRG	1 cut(s)	1668
Bsp119I	TTCGAA	1 cut(s)	1419
Bsp120I	GGGCCC	1 cut(s)	1678
Bsp1286I	GDGCHC	3 cut(s)	296, 1201, 1682
Bsp1407I	TGTACA	1 cut(s)	1425
Bsp68I	TCGCGA	1 cut(s)	781
BspACI	CCGC	8 cut(s)	27, 172, 205, 239, 602, 710, 1592, 1925
BspANI	GGCC	5 cut(s)	132, 189, 1316, 1490, 1680
BspCNI	CTCAG	4 cut(s)	357, 727, 1017, 1729
BspDI	ATCGAT	1 cut(s)	1930
BspFNI	CGCG	2 cut(s)	394, 781
BspHI	TCATGA	1 cut(s)	1087
BspLI	GGNNCC	2 cut(s)	1679, 1680
BspPI	GGATC	3 cut(s)	1420, 1602, 1935
BspT104I	TTCGAA	1 cut(s)	1419
BsrBI	CCGCTC	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	1425
BsrI	ACTGG	6 cut(s)	435, 569, 810, 1206, 1409, 1813
BssECI	CCNNGG	2 cut(s)	184, 1873
BssNI	GRCGYC	1 cut(s)	1903
Bst2UI	CCWGG	4 cut(s)	1031, 1571, 1875, 1976
Bst4CI	ACNGT	6 cut(s)	556, 707, 989, 1048, 1162, 1425
Bst6I	CTCTTC	1 cut(s)	1329
BstACI	GRCGYC	1 cut(s)	1903
BstAPI	GCANNNNNTGC	2 cut(s)	866, 1730
BstAUI	TGTACA	1 cut(s)	1425
BstBI	TTCGAA	1 cut(s)	1419
BstC8I	GCNNGC	4 cut(s)	921, 1179, 1608, 1788
BstDEI	CTNAG	8 cut(s)	365, 735, 795, 1004, 1241, 1737, 1830, 1847
BstF5I	GGATG	6 cut(s)	120, 165, 394, 1307, 1825, 1936
BstFNI	CGCG	2 cut(s)	394, 781
BstHHI	GCGC	1 cut(s)	394
BstMAI	GTCTC	3 cut(s)	904, 1007, 1101
BstMWI	GCNNNNNNNGC	5 cut(s)	608, 866, 1589, 1612, 1730
BstNI	CCWGG	4 cut(s)	1031, 1571, 1875, 1976
BstNSI	RCATGY	3 cut(s)	422, 923, 985
BstSCI	CCNGG	6 cut(s)	1029, 1316, 1569, 1610, 1873, 1974
BstSFI	CTRYAG	1 cut(s)	1879
BstSLI	GKGCMC	1 cut(s)	1682
BstUI	CGCG	2 cut(s)	394, 781
BstV1I	GCAGC	3 cut(s)	1689, 1720, 1789
BstX2I	RGATCY	2 cut(s)	1412, 1594
BstYI	RGATCY	2 cut(s)	1412, 1594
Bsu15I	ATCGAT	1 cut(s)	1930
Bsu36I	CCTNAGG	1 cut(s)	795
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	5 cut(s)	132, 189, 1316, 1490, 1680
BsuTUI	ATCGAT	1 cut(s)	1930
BtgZI	GCGATG	1 cut(s)	208
BtsCI	GGATG	6 cut(s)	120, 165, 394, 1307, 1825, 1936
BtsIMutI	CAGTG	3 cut(s)	712, 803, 1199
BtuMI	TCGCGA	1 cut(s)	781
Cac8I	GCNNGC	4 cut(s)	921, 1179, 1608, 1788
CciI	TCATGA	1 cut(s)	1087
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	3 cut(s)	1315, 1678, 1679
ClaI	ATCGAT	1 cut(s)	1930
CsiI	ACCWGGT	1 cut(s)	1029
Csp6I	GTAC	4 cut(s)	118, 334, 985, 1426
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviQI	GTAC	4 cut(s)	118, 334, 985, 1426
DdeI	CTNAG	8 cut(s)	365, 735, 795, 1004, 1241, 1737, 1830, 1847
Eam1104I	CTCTTC	1 cut(s)	1329
EarI	CTCTTC	1 cut(s)	1329
EciI	GGCGGA	1 cut(s)	1607
Eco24I	GRGCYC	1 cut(s)	1682
Eco32I	GATATC	1 cut(s)	768
Eco57I	CTGAAG	2 cut(s)	34, 1883
Eco81I	CCTNAGG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	1668
EcoO109I	RGGNCCY	2 cut(s)	1678, 1679
EcoRI	GAATTC	2 cut(s)	284, 1369
EcoRII	CCWGG	4 cut(s)	1029, 1569, 1873, 1974
EcoRV	GATATC	1 cut(s)	768
EcoT22I	ATGCAT	2 cut(s)	921, 1307
EcoT38I	GRGCYC	1 cut(s)	1682
Esp3I	CGTCTC	1 cut(s)	1007
FaqI	GGGAC	2 cut(s)	1415, 1872
FauI	CCCGC	3 cut(s)	34, 212, 595
FauNDI	CATATG	1 cut(s)	1387
FbaI	TGATCA	1 cut(s)	1090
FblI	GTMKAC	1 cut(s)	1906
Fnu4HI	GCNGC	3 cut(s)	1703, 1734, 1803
FokI	GGATG	6 cut(s)	107, 152, 401, 1314, 1832, 1923
FriOI	GRGCYC	1 cut(s)	1682
Fsp4HI	GCNGC	3 cut(s)	1703, 1734, 1803
FspBI	CTAG	4 cut(s)	1193, 1280, 1475, 1601
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	3 cut(s)	1703, 1734, 1803
GsaI	CCCAGC	1 cut(s)	1888
GsuI	CTGGAG	3 cut(s)	827, 1223, 1997
HaeIII	GGCC	5 cut(s)	132, 189, 1316, 1490, 1680
HapII	CCGG	2 cut(s)	1318, 1611
HhaI	GCGC	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	1903
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	2 cut(s)	562, 1907
HindII	GTYRAC	2 cut(s)	562, 1907
HindIII	AAGCTT	2 cut(s)	1322, 1742
HinfI	GANTC	7 cut(s)	235, 440, 545, 800, 1084, 1140, 1189
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	2 cut(s)	1318, 1611
HphI	GGTGA	6 cut(s)	293, 331, 436, 503, 707, 1045
Hpy166II	GTNNAC	5 cut(s)	307, 562, 855, 1634, 1907
Hpy188I	TCNGA	7 cut(s)	388, 946, 1123, 1145, 1711, 1919, 1948
Hpy188III	TCNNGA	7 cut(s)	259, 289, 780, 1088, 1100, 1514, 1837
Hpy8I	GTNNAC	5 cut(s)	307, 562, 855, 1634, 1907
Hpy99I	CGWCG	1 cut(s)	1908
HpyCH4III	ACNGT	6 cut(s)	556, 707, 989, 1048, 1162, 1425
HpyCH4IV	ACGT	1 cut(s)	1903
HpyF10VI	GCNNNNNNNGC	5 cut(s)	608, 866, 1589, 1612, 1730
HpyF3I	CTNAG	8 cut(s)	365, 735, 795, 1004, 1241, 1737, 1830, 1847
HpySE526I	ACGT	1 cut(s)	1903
Hsp92I	GRCGYC	1 cut(s)	1903
HspAI	GCGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	1090
KspAI	GTTAAC	1 cut(s)	562
LmnI	GCTCC	5 cut(s)	246, 401, 808, 842, 1196
Lsp1109I	GCAGC	3 cut(s)	1689, 1720, 1789
LweI	GCATC	3 cut(s)	379, 1292, 1654
MabI	ACCWGGT	1 cut(s)	1029
MaeI	CTAG	4 cut(s)	1193, 1280, 1475, 1601
MaeII	ACGT	1 cut(s)	1903
MaeIII	GTNAC	6 cut(s)	550, 631, 1033, 1081, 1465, 1556
MbiI	CCGCTC	1 cut(s)	241
MboII	GAAGA	5 cut(s)	840, 867, 1346, 1534, 1876
MflI	RGATCY	2 cut(s)	1412, 1594
MhlI	GDGCHC	3 cut(s)	296, 1201, 1682
MluCI	AATT	8 cut(s)	284, 396, 637, 861, 870, 967, 1369, 1442
MlyI	GAGTC	4 cut(s)	229, 1078, 1149, 1198
MmeI	TCCRAC	4 cut(s)	681, 820, 1123, 1962
Mph1103I	ATGCAT	2 cut(s)	921, 1307
MroXI	GAANNNNTTC	2 cut(s)	940, 1529
MseI	TTAA	8 cut(s)	71, 561, 890, 1071, 1248, 1266, 1688, 1967
MslI	CAYNNNNRTG	4 cut(s)	174, 417, 924, 1310
MspI	CCGG	2 cut(s)	1318, 1611
MspR9I	CCNGG	6 cut(s)	1031, 1318, 1571, 1612, 1875, 1976
Mva1269I	GAATGC	2 cut(s)	998, 1705
MvaI	CCWGG	4 cut(s)	1031, 1571, 1875, 1976
MvnI	CGCG	2 cut(s)	394, 781
MwoI	GCNNNNNNNGC	5 cut(s)	608, 866, 1589, 1612, 1730
NciI	CCSGG	2 cut(s)	1318, 1612
NdeI	CATATG	1 cut(s)	1387
NlaIV	GGNNCC	2 cut(s)	1679, 1680
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	3 cut(s)	631, 1033, 1081
NruI	TCGCGA	1 cut(s)	781
NsiI	ATGCAT	2 cut(s)	921, 1307
NspI	RCATGY	3 cut(s)	422, 923, 985
NspV	TTCGAA	1 cut(s)	1419
PaeI	GCATGC	1 cut(s)	923
PagI	TCATGA	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	981
PctI	GAATGC	2 cut(s)	998, 1705
PdmI	GAANNNNTTC	2 cut(s)	940, 1529
PfeI	GAWTC	3 cut(s)	440, 545, 800
PkrI	GCNGC	3 cut(s)	1704, 1735, 1804
PleI	GAGTC	4 cut(s)	229, 1078, 1148, 1197
PpsI	GAGTC	4 cut(s)	229, 1078, 1148, 1197
PscI	ACATGT	1 cut(s)	981
PsiI	TTATAA	1 cut(s)	1748
Psp6I	CCWGG	4 cut(s)	1029, 1569, 1873, 1974
PspFI	CCCAGC	1 cut(s)	1884
PspGI	CCWGG	4 cut(s)	1029, 1569, 1873, 1974
PspN4I	GGNNCC	2 cut(s)	1679, 1680
PspOMI	GGGCCC	1 cut(s)	1678
PspPI	GGNCC	3 cut(s)	1315, 1678, 1679
PsuI	RGATCY	2 cut(s)	1412, 1594
RruI	TCGCGA	1 cut(s)	781
RsaI	GTAC	4 cut(s)	119, 335, 986, 1427
RsaNI	GTAC	4 cut(s)	118, 334, 985, 1426
RseI	CAYNNNNRTG	4 cut(s)	174, 417, 924, 1310
SalI	GTCGAC	1 cut(s)	1905
SaqAI	TTAA	8 cut(s)	71, 561, 890, 1071, 1248, 1266, 1688, 1967
SatI	GCNGC	3 cut(s)	1703, 1734, 1803
Sau96I	GGNCC	3 cut(s)	1315, 1678, 1679
SchI	GAGTC	4 cut(s)	229, 1078, 1149, 1198
ScrFI	CCNGG	6 cut(s)	1031, 1318, 1571, 1612, 1875, 1976
SduI	GDGCHC	3 cut(s)	296, 1201, 1682
SexAI	ACCWGGT	1 cut(s)	1029
SfaNI	GCATC	3 cut(s)	379, 1292, 1654
SfcI	CTRYAG	1 cut(s)	1879
SfuI	TTCGAA	1 cut(s)	1419
SmiMI	CAYNNNNRTG	4 cut(s)	174, 417, 924, 1310
SmlI	CTYRAG	2 cut(s)	259, 1100
SmoI	CTYRAG	2 cut(s)	259, 1100
SphI	GCATGC	1 cut(s)	923
Sse9I	AATT	8 cut(s)	284, 396, 637, 861, 870, 967, 1369, 1442
SsiI	CCGC	8 cut(s)	27, 172, 205, 239, 602, 710, 1592, 1925
SspMI	CTAG	4 cut(s)	1193, 1280, 1475, 1601
StyD4I	CCNGG	6 cut(s)	1029, 1316, 1569, 1610, 1873, 1974
TaaI	ACNGT	6 cut(s)	556, 707, 989, 1048, 1162, 1425
TaiI	ACGT	1 cut(s)	1906
TaqI	TCGA	6 cut(s)	288, 878, 1232, 1419, 1906, 1930
TasI	AATT	8 cut(s)	284, 396, 637, 861, 870, 967, 1369, 1442
TatI	WGTACW	2 cut(s)	984, 1425
TfiI	GAWTC	3 cut(s)	440, 545, 800
Tru1I	TTAA	8 cut(s)	71, 561, 890, 1071, 1248, 1266, 1688, 1967
Tru9I	TTAA	8 cut(s)	71, 561, 890, 1071, 1248, 1266, 1688, 1967
TscAI	CASTG	3 cut(s)	712, 810, 1206
TseFI	GTSAC	3 cut(s)	631, 1033, 1081
TseI	GCWGC	3 cut(s)	1702, 1733, 1802
Tsp45I	GTSAC	3 cut(s)	631, 1033, 1081
TspRI	CASTG	3 cut(s)	712, 810, 1206
XapI	RAATTY	2 cut(s)	284, 1369
XceI	RCATGY	3 cut(s)	422, 923, 985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1881
XmiI	GTMKAC	1 cut(s)	1906
XmnI	GAANNNNTTC	2 cut(s)	940, 1529
XspI	CTAG	4 cut(s)	1193, 1280, 1475, 1601
ZraI	GACGTC	1 cut(s)	1904
Zsp2I	ATGCAT	2 cut(s)	921, 1307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.