Rorug05G0109900

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
9780983 .. 9781841
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0109900.1

Sequence Viewer

Length: 732 bp
ATGTTGGAAGATGAGAGTAGTGAGAGCGTGGAGGTTGGATTTTCAAGAGTTCACATTAAGGCTGTAATTACGGATTTGTTCACGGCTAGTACTGACACAACAGCTATTGCAATGGAGTGGGCGTTAGCGGAGCTCATCAATCATCCAACTGTGCTAGAAAAAGCAAGGGAGGAGATCGATAGCGTAGTTGGGAATGGACGAATAGTGGAAGAATCGGATTGTCCAAGTCTTCCGTACATCCAAGCTATCATAAAAGAAACATTTAGGCTACACCCACCCGTGCCTATGGTCGCAAGAATATCTGTAGAAGACTGTAAGGTCGGGAAATATGTTATTCCGAAGAATACAATGCTGTTTGTGAACAATTGGGCCATCGGAAGAGATCCTAAAAATTGGGAAAAACCGTTGGAATTTTGGCCTGAGAGATTCTTAGAACACATTGGAGGTGCCCAGACAAGTGGAATGGATGTTAGAGGTCAACATTTTCAATATCTTCCATTTGGGACCGGGAGGAGGATATGTCCCGGTATCAACTTGACCATGAAAATGGTTCCTAGTCTAGTAGCAGCTATGATTCAGCGCTTTGATTGGAAGGTTATTCCCAGCAAGAAAATGAACAATGATGATGTTGTTCAAATGGATGAAAAGCCTGGACTGACAACTCCAAGAGCCCATGATCTTGTGTGTTCTCCAGTAGCTCGCTTTAATTTACTCAACATCCTTAAACCTTGA

Protein Analysis

243

Amino Acids

27.38

Weight (kDa)

5.9

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 8 - 208 2.7e-66 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 446
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 377
AcsI RAATTY 1 cut(s) 410
AfaI GTAC 2 cut(s) 91, 236
AfeI AGCGCT 1 cut(s) 581
AfiI CCNNNNNNNGG 1 cut(s) 513
AgsI TTSAA 3 cut(s) 45, 488, 635
AjnI CCWGG 1 cut(s) 649
AluBI AGCT 5 cut(s) 104, 133, 245, 569, 698
AluI AGCT 5 cut(s) 104, 133, 245, 569, 698
Alw21I GWGCWC 1 cut(s) 135
AlwI GGATC 1 cut(s) 377
Aor51HI AGCGCT 1 cut(s) 581
AoxI GGCC 2 cut(s) 369, 416
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 1 cut(s) 410
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 369, 504
AsuC2I CCSGG 2 cut(s) 508, 525
AvaII GGWCC 1 cut(s) 504
BaeGI GKGCMC 1 cut(s) 451
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 2 cut(s) 135, 673
BbsI GAAGAC 2 cut(s) 221, 315
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 578
BccI CCATC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 651
BcnI CCSGG 2 cut(s) 508, 525
BfaI CTAG 4 cut(s) 87, 155, 555, 560
BfmI CTRYAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 583
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 3 cut(s) 508, 525, 651
Bme18I GGWCC 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 369, 504
BmiI GGNNCC 3 cut(s) 448, 505, 552
BmrFI CCNGG 3 cut(s) 508, 525, 651
BpiI GAAGAC 2 cut(s) 221, 315
BpmI CTGGAG 1 cut(s) 675
BpuMI CCSGG 2 cut(s) 508, 525
Bsa29I ATCGAT 1 cut(s) 177
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 505, 535
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 1 cut(s) 692
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 651
BseCI ATCGAT 1 cut(s) 177
BseGI GGATG 5 cut(s) 142, 237, 472, 646, 717
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 692
BseRI GAGGAG 2 cut(s) 185, 526
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 1 cut(s) 578
BseYI CCCAGC 1 cut(s) 602
BshFI GGCC 2 cut(s) 371, 418
BshNI GGYRCC 1 cut(s) 446
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 2 cut(s) 507, 525
BslFI GGGAC 2 cut(s) 507, 517
BslI CCNNNNNNNGG 1 cut(s) 513
BsmFI GGGAC 2 cut(s) 507, 517
BsnI GGCC 2 cut(s) 371, 418
Bsp1286I GDGCHC 3 cut(s) 135, 451, 673
Bsp143I GATC 3 cut(s) 174, 382, 676
BspACI CCGC 1 cut(s) 128
BspANI GGCC 2 cut(s) 371, 418
BspCNI CTCAG 1 cut(s) 412
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 448, 505, 552
BspPI GGATC 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 1 cut(s) 692
BssMI GATC 3 cut(s) 174, 382, 676
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 3 cut(s) 151, 314, 405
Bst6I CTCTTC 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 700
BstDEI CTNAG 2 cut(s) 420, 430
BstF5I GGATG 5 cut(s) 142, 237, 472, 646, 717
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 3 cut(s) 177, 385, 679
BstMBI GATC 3 cut(s) 174, 382, 676
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 3 cut(s) 506, 523, 649
BstSFI CTRYAG 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 578
BstV2I GAAGAC 2 cut(s) 221, 315
BstX2I RGATCY 1 cut(s) 382
BstXI CCANNNNNNTGG 2 cut(s) 458, 547
BstYI RGATCY 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 2 cut(s) 371, 418
BsuTUI ATCGAT 1 cut(s) 177
BtsCI GGATG 5 cut(s) 142, 237, 472, 646, 717
Cac8I GCNNGC 1 cut(s) 700
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 369, 504
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 2 cut(s) 90, 235
CviAII CATG 2 cut(s) 541, 674
CviQI GTAC 2 cut(s) 90, 235
DdeI CTNAG 2 cut(s) 420, 430
DpnI GATC 3 cut(s) 176, 384, 678
DpnII GATC 3 cut(s) 174, 382, 676
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 2 cut(s) 135, 673
Eco47I GGWCC 1 cut(s) 504
Eco47III AGCGCT 1 cut(s) 581
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 135, 673
FaeI CATG 2 cut(s) 544, 677
FaiI YATR 7 cut(s) 251, 287, 330, 520, 542, 572, 675
FaqI GGGAC 2 cut(s) 507, 517
FatI CATG 2 cut(s) 540, 673
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 5 cut(s) 129, 224, 479, 653, 704
FriOI GRGCYC 2 cut(s) 135, 673
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 4 cut(s) 87, 155, 555, 560
GlaI GCGC 1 cut(s) 581
GluI GCNGC 1 cut(s) 567
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 675
HaeII RGCGCY 1 cut(s) 583
HaeIII GGCC 2 cut(s) 371, 418
HapII CCGG 2 cut(s) 507, 525
HhaI GCGC 1 cut(s) 582
Hin1II CATG 2 cut(s) 544, 677
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HincII GTYRAC 1 cut(s) 479
HindII GTYRAC 1 cut(s) 479
HinfI GANTC 3 cut(s) 212, 426, 574
HpaII CCGG 2 cut(s) 507, 525
Hpy166II GTNNAC 4 cut(s) 52, 81, 361, 479
Hpy188I TCNGA 3 cut(s) 217, 339, 377
Hpy188III TCNNGA 2 cut(s) 45, 322
Hpy8I GTNNAC 4 cut(s) 52, 81, 361, 479
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 3 cut(s) 151, 314, 405
HpyCH4V TGCA 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 420, 430
Hsp92II CATG 2 cut(s) 544, 677
HspAI GCGC 1 cut(s) 580
Kzo9I GATC 3 cut(s) 174, 382, 676
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 8 cut(s) 432, 464, 520, 538, 616, 636, 663, 705
Lsp1109I GCAGC 1 cut(s) 578
MaeI CTAG 4 cut(s) 87, 155, 555, 560
MalI GATC 3 cut(s) 176, 384, 678
MboI GATC 3 cut(s) 174, 382, 676
MboII GAAGA 7 cut(s) 20, 221, 221, 320, 352, 390, 485
MfeI CAATTG 1 cut(s) 364
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 3 cut(s) 135, 451, 673
MluCI AATT 5 cut(s) 66, 364, 391, 410, 706
MmeI TCCRAC 3 cut(s) 16, 170, 387
MnlI CCTC 6 cut(s) 25, 163, 437, 467, 504, 507
MseI TTAA 3 cut(s) 57, 705, 723
MslI CAYNNNNRTG 1 cut(s) 545
MspI CCGG 2 cut(s) 507, 525
MspR9I CCNGG 3 cut(s) 508, 525, 651
MunI CAATTG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 651
NciI CCSGG 2 cut(s) 508, 525
NdeII GATC 3 cut(s) 174, 382, 676
NlaIII CATG 2 cut(s) 544, 677
NlaIV GGNNCC 3 cut(s) 448, 505, 552
PfeI GAWTC 3 cut(s) 212, 426, 574
PkrI GCNGC 1 cut(s) 568
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 448, 505, 552
PspPI GGNCC 2 cut(s) 369, 504
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 2 cut(s) 91, 236
RsaNI GTAC 2 cut(s) 90, 235
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 57, 705, 723
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 3 cut(s) 174, 382, 676
Sau96I GGNCC 2 cut(s) 369, 504
ScaI AGTACT 1 cut(s) 91
ScrFI CCNGG 3 cut(s) 508, 525, 651
SduI GDGCHC 3 cut(s) 135, 451, 673
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 545
Sse9I AATT 5 cut(s) 66, 364, 391, 410, 706
SsiI CCGC 1 cut(s) 128
SspMI CTAG 4 cut(s) 87, 155, 555, 560
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 506, 523, 649
TaaI ACNGT 3 cut(s) 151, 314, 405
TaqI TCGA 1 cut(s) 177
TasI AATT 5 cut(s) 66, 364, 391, 410, 706
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 3 cut(s) 212, 426, 574
Tru1I TTAA 3 cut(s) 57, 705, 723
Tru9I TTAA 3 cut(s) 57, 705, 723
TseI GCWGC 1 cut(s) 566
TspDTI ATGAA 3 cut(s) 557, 629, 657
TspGWI ACGGA 2 cut(s) 86, 222
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 1 cut(s) 410
XspI CTAG 4 cut(s) 87, 155, 555, 560
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.