Rroxscaffold_3G00253120

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
47181707 .. 47182432
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253120.1

Sequence Viewer

Length: 393 bp
ATGGAAGTTTCAGTGGCTGGTTTTGCACTGAGCGTTGTTCTTGTTGGCCTACTGAGTTGTTCATGGAGTGTACTCAACTGGGTGTGGCTGAGGCCAAAGAGAATTGAAAGATTGTTGAGACAACAAGGCTTTCAGGGAAATTCCTACAAGCTTTTCTATGGAGACGTGAAGGAGAGTTCTGCAATGTTGAGAGAAGCAAAATCTAAGCCAATGAAACTCACGACCTGTCATGATATAGCCCCAAGAGTCATCCCGTTTGTGCATCGAACTGTCAACATCCATGTGAGGAAGGACCTTTTATATATAGAAGATGTACGGGATTTGAAAGGAGTTTCAAGTCAACTTCATGGAGGATTCCCTAGTAGAATGTATAACAAATTAAGGCCACAGTAG

Protein Analysis

130

Amino Acids

14.94

Weight (kDa)

10.07

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 2 cut(s) 72, 315
AgsI TTSAA 3 cut(s) 107, 325, 336
AjiI CACGTC 1 cut(s) 166
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 112, 156
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 3 cut(s) 46, 92, 383
ApoI RAATTY 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 292
AvaII GGWCC 1 cut(s) 292
BbvCI CCTCAGC 1 cut(s) 89
BcoDI GTCTC 2 cut(s) 112, 156
BfaI CTAG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 292
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 189
BseGI GGATG 2 cut(s) 249, 276
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 3 cut(s) 20, 44, 80
BseNI ACTGG 1 cut(s) 83
BshFI GGCC 3 cut(s) 48, 94, 385
BsmAI GTCTC 2 cut(s) 112, 156
BsmBI CGTCTC 1 cut(s) 156
BsnI GGCC 3 cut(s) 48, 94, 385
BspANI GGCC 3 cut(s) 48, 94, 385
BspCNI CTCAG 3 cut(s) 21, 45, 81
BspHI TCATGA 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 271, 390
BstDEI CTNAG 4 cut(s) 29, 53, 89, 204
BstF5I GGATG 2 cut(s) 249, 276
BstMAI GTCTC 2 cut(s) 112, 156
BstMWI GCNNNNNNNGC 1 cut(s) 23
BsuRI GGCC 3 cut(s) 48, 94, 385
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 249, 276
BtsIMutI CAGTG 2 cut(s) 18, 26
CaiI CAGNNNCTG 1 cut(s) 17
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 71, 314
CviAII CATG 4 cut(s) 63, 230, 281, 347
CviJI RGCY 9 cut(s) 17, 48, 88, 94, 129, 151, 208, 239, 385
CviKI_1 RGCY 9 cut(s) 17, 48, 88, 94, 129, 151, 208, 239, 385
CviQI GTAC 2 cut(s) 71, 314
DdeI CTNAG 4 cut(s) 29, 53, 89, 204
Eco47I GGWCC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 4 cut(s) 66, 233, 284, 350
FatI CATG 4 cut(s) 62, 229, 280, 346
FokI GGATG 2 cut(s) 236, 263
FspBI CTAG 1 cut(s) 360
HaeIII GGCC 3 cut(s) 48, 94, 385
Hin1II CATG 4 cut(s) 66, 233, 284, 350
HincII GTYRAC 2 cut(s) 274, 341
HindII GTYRAC 2 cut(s) 274, 341
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 2 cut(s) 246, 354
Hpy166II GTNNAC 3 cut(s) 71, 274, 341
Hpy188III TCNNGA 2 cut(s) 220, 230
Hpy8I GTNNAC 3 cut(s) 71, 274, 341
HpyAV CCTTC 2 cut(s) 163, 283
HpyCH4III ACNGT 2 cut(s) 271, 390
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 26, 182, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 4 cut(s) 29, 53, 89, 204
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 4 cut(s) 66, 233, 284, 350
LpnPI CCDG 4 cut(s) 3, 64, 119, 238
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 165
MboII GAAGA 1 cut(s) 320
MluCI AATT 3 cut(s) 102, 139, 377
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 3 cut(s) 84, 279, 344
MseI TTAA 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 23
NlaIII CATG 4 cut(s) 66, 233, 284, 350
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 1 cut(s) 354
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 292
PspPI GGNCC 1 cut(s) 292
PspPPI RGGWCCY 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 72, 315
RsaNI GTAC 2 cut(s) 71, 314
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 1 cut(s) 380
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 255
SetI ASST 4 cut(s) 153, 168, 227, 297
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 3 cut(s) 102, 139, 377
SspMI CTAG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 271, 390
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 265
TasI AATT 3 cut(s) 102, 139, 377
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 1 cut(s) 354
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 2 cut(s) 18, 33
TspDTI ATGAA 3 cut(s) 51, 227, 335
TspRI CASTG 2 cut(s) 18, 33
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 139
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.