Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Forward (+)

22633335 .. 22634664

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG222100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCAGGTGAAGCAACCAAAGATGACTTATTAGGTGCACTTATGGAGTCAAACCTAAAGGACATTCGGGATCATGGGAAGAACAACAAAAATGTAACCATGATTTTACTTGAAGTTTTACGATTATACCCAGCAGTAGTTGTGCTTTCTCGAACCACTCATAAGAAAATACAACTTGGAAAATTCACACTACCAGCTGGAGTCGAAATCGGGTTACCAACACTGCTCATTCATCATGACAAGGAAATGTGGGGTGATGATGCAAAAGAGTTCAAGCCCGAGAGTATGGTGCATCTATCATGTTACATAAACGTTGAGGAAACTATTGTAATCAAAATGGTATCAAACAACACATCTTACTTTCAAATAAATAATGCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

127

Amino Acids

14.25

Weight (kDa)

6.19

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 94	5.8e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	312
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	113, 274, 365
AluBI	AGCT	2 cut(s)	197, 381
AluI	AGCT	2 cut(s)	197, 381
Alw21I	GWGCWC	1 cut(s)	40
Alw44I	GTGCAC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	278
ApaLI	GTGCAC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	20, 266
AvaI	CYCGRG	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	250, 301
BpmI	CTGGAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	235
BspPI	GGATC	1 cut(s)	78
BssMI	GATC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	213
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	379
CciI	TCATGA	1 cut(s)	235
CviAII	CATG	4 cut(s)	74, 100, 236, 300
CviJI	RGCY	3 cut(s)	197, 277, 381
CviKI_1	RGCY	3 cut(s)	197, 277, 381
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	213
FaeI	CATG	4 cut(s)	77, 103, 239, 303
FaiI	YATR	9 cut(s)	44, 75, 101, 127, 162, 237, 287, 301, 308
FatI	CATG	4 cut(s)	73, 99, 235, 299
FspBI	CTAG	1 cut(s)	382
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	219
Hin1II	CATG	4 cut(s)	77, 103, 239, 303
HinfI	GANTC	2 cut(s)	47, 201
HphI	GGTGA	2 cut(s)	20, 266
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188III	TCNNGA	3 cut(s)	68, 150, 236
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	38, 263, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	77, 103, 239, 303
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	3 cut(s)	144, 183, 207
LweI	GCATC	2 cut(s)	250, 301
MaeI	CTAG	1 cut(s)	382
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	94, 213, 302
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	56, 210
MnlI	CCTC	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	4 cut(s)	77, 103, 239, 303
PagI	TCATGA	1 cut(s)	235
PleI	GAGTC	2 cut(s)	55, 209
PpsI	GAGTC	2 cut(s)	55, 209
Psp1406I	AACGTT	1 cut(s)	312
PspEI	GGTNACC	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	56, 210
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	6 cut(s)	10, 37, 57, 199, 315, 383
SfaNI	GCATC	2 cut(s)	250, 301
Sse9I	AATT	1 cut(s)	182
SspMI	CTAG	1 cut(s)	382
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	151, 204
TasI	AATT	1 cut(s)	182
TscAI	CASTG	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	228
VneI	GTGCAC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	182
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.