RLG00000018532

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
31371233 .. 31372032
800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018532

Sequence Viewer

Length: 561 bp
ATGAACAAGAGGATGAAGCAAATTGACAAAGAAATAAGGGGTTTACTCAAGGGTATTATAATTAAAAGAGAGCAGGCCATTAAGGCAGGTGAAGCCACTAAAGATGACTTATTAGGTGCACTCCTAGAGTCTAGCTTGAATGATATTCAAGGACATGGGAAGAACAACAAAAATGTTGGGATGAGTATTGAAGATGTAATTGAGGAGTGTAAATTGTTTTACTTTGCTGGGCAAGAGACCACTTCAATTTTGCTGGTTTGGACAATGATTTTACTTGGTCAGAATCAGAATTGGAAAGATCGAGCAAGACAAGAGGTTCTGGAAGTCTTTGGAAGCAACAAGCCAGACTTTGATGGCCTAATTCACCTGAAAGTTCTAGAGTTGAAGTCAGCTTACCTATACTGCTCATTCACCATGATAAGGAACTGTGGGGTGATGATGCAAATAAGTTCAAGCCAGAGAGGTTTTCTGAAGGAGTTTCTAAGGCCACAAAGAACTGACTCTCGTTCTCCCCATTTGGAGCTGGTCCTCGGATCTGTGTTGGACAAAACTTTGCCATGA

Protein Analysis

187

Amino Acids

21.13

Weight (kDa)

8.73

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 127 2.6e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AarI CACCTGC 1 cut(s) 77
Acc36I ACCTGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 491
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 6 cut(s) 139, 149, 191, 246, 385, 453
AluBI AGCT 3 cut(s) 135, 392, 523
AluI AGCT 3 cut(s) 135, 392, 523
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 230
Alw44I GTGCAC 1 cut(s) 117
AlwI GGATC 1 cut(s) 541
AoxI GGCC 3 cut(s) 75, 355, 485
ApaLI GTGCAC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 526
AsuHPI GGTGA 4 cut(s) 101, 356, 403, 445
AvaII GGWCC 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 121
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
Bbv12I GWGCWC 1 cut(s) 121
BccI CCATC 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 3 cut(s) 125, 132, 377
BfuAI ACCTGC 1 cut(s) 77
BglI GCCNNNNNGGC 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 526
BmsI GCATC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 529
Bsc4I CCNNNNNNNGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 2 cut(s) 18, 186
BseLI CCNNNNNNNGG 1 cut(s) 420
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 227
BshFI GGCC 3 cut(s) 77, 357, 487
BsiHKAI GWGCWC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 3 cut(s) 77, 357, 487
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 298, 533
BspANI GGCC 3 cut(s) 77, 357, 487
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 2 cut(s) 298, 533
Bst4CI ACNGT 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 482
BstF5I GGATG 2 cut(s) 18, 186
BstKTI GATC 2 cut(s) 301, 536
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 298, 533
BstMWI GCNNNNNNNGC 2 cut(s) 83, 92
BstSLI GKGCMC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BsuRI GGCC 3 cut(s) 77, 357, 487
BtsCI GGATG 2 cut(s) 18, 186
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 526
CviAII CATG 3 cut(s) 155, 415, 558
CviJI RGCY 9 cut(s) 77, 95, 135, 343, 357, 392, 456, 487, 523
CviKI_1 RGCY 9 cut(s) 77, 95, 135, 343, 357, 392, 456, 487, 523
DdeI CTNAG 1 cut(s) 482
DpnI GATC 2 cut(s) 300, 535
DpnII GATC 2 cut(s) 298, 533
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 491
FaeI CATG 3 cut(s) 158, 418, 561
FaiI YATR 5 cut(s) 59, 156, 400, 416, 559
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 3 cut(s) 154, 414, 557
FokI GGATG 2 cut(s) 25, 193
FspBI CTAG 3 cut(s) 125, 132, 377
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 3 cut(s) 77, 357, 487
Hin1II CATG 3 cut(s) 158, 418, 561
HinfI GANTC 3 cut(s) 128, 283, 500
HphI GGTGA 4 cut(s) 101, 356, 403, 445
Hpy166II GTNNAC 2 cut(s) 44, 119
Hpy188I TCNGA 4 cut(s) 282, 288, 471, 533
Hpy188III TCNNGA 2 cut(s) 320, 377
Hpy8I GTNNAC 2 cut(s) 44, 119
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 119, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 92
HpyF3I CTNAG 1 cut(s) 482
Hsp92II CATG 3 cut(s) 158, 418, 561
Kzo9I GATC 2 cut(s) 298, 533
LmnI GCTCC 1 cut(s) 520
LpnPI CCDG 9 cut(s) 59, 72, 213, 239, 305, 357, 380, 470, 509
LweI GCATC 1 cut(s) 429
MaeI CTAG 3 cut(s) 125, 132, 377
MalI GATC 2 cut(s) 300, 535
MboI GATC 2 cut(s) 298, 533
MboII GAAGA 2 cut(s) 172, 203
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 7 cut(s) 21, 60, 198, 212, 246, 289, 360
MlyI GAGTC 2 cut(s) 137, 494
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 5 cut(s) 3, 196, 307, 455, 539
MseI TTAA 2 cut(s) 63, 81
MwoI GCNNNNNNNGC 2 cut(s) 83, 92
NdeII GATC 2 cut(s) 298, 533
NlaIII CATG 3 cut(s) 158, 418, 561
PaqCI CACCTGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 283
PleI GAGTC 2 cut(s) 136, 494
PpsI GAGTC 2 cut(s) 136, 494
PsiI TTATAA 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 526
PsuI RGATCY 1 cut(s) 533
SaqAI TTAA 2 cut(s) 63, 81
Sau3AI GATC 2 cut(s) 298, 533
Sau96I GGNCC 1 cut(s) 526
SchI GAGTC 2 cut(s) 137, 494
SduI GDGCHC 1 cut(s) 121
SetI ASST 9 cut(s) 91, 118, 137, 318, 369, 394, 399, 466, 525
SfaNI GCATC 1 cut(s) 429
SinI GGWCC 1 cut(s) 526
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 7 cut(s) 21, 60, 198, 212, 246, 289, 360
SspMI CTAG 3 cut(s) 125, 132, 377
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 301
TasI AATT 7 cut(s) 21, 60, 198, 212, 246, 289, 360
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 2 cut(s) 63, 81
Tru9I TTAA 2 cut(s) 63, 81
TspDTI ATGAA 2 cut(s) 17, 29
VneI GTGCAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 526
XbaI TCTAGA 1 cut(s) 376
XspI CTAG 3 cut(s) 125, 132, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.