Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

17120188 .. 17215437

Gene Structure 95250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG090900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 743 bp

ATGGAAGTGTCATTAGGCAGCATAGCAGTATCCGTTGTTTTGTTGATTATAGCTTCATCATGGGCATGGAGGGTGCTGAATTGGGTGTGGTTGAAGCCAAAGAAGCTAGAAAACTGTCTGAGGCAGCAAGGTTTTGCCGGAAACTCGTACCGCCTTTTGATTGGCGATCTTAAGGAGAACATCAAGGTGGTGAAGGAGGCCACTTCAAAACCCATGAACCTCTCCGATGATGTAGCCCGGCGTGTCCTGCCATATCTCCATCAAACCATTAACAAACATGGTAAGAATTCTTTCATGTGGTTTGGTACTACACCAAGGGTGACCATCATGAATCCAGACTATTTGAAAGATATATTCACCAAATATGATGATTTTCAGAAGCCACATCCTAGTCCTCTTGTCAAGTTGCTATCATACGGTATTGTAAACCTCGAGGGAGAAAAATGGGTTCAACGGAGAAAGCTTATTAACCCAGCATTCCATATCGAGAAGCTAAAGAATATGTTGCCAGCATTTTATCAAAGCTGCACTGATATGATTAGCAATTGGGAGATCAAGGTGTCGAAGGAGGGATCATGTGAATTGGATATTTGGCCTTTTCTTCAAAATATGTCAGGAGATGTGATTTCTAGGACAGCATTTGGTAGTAGTTATGAAGAAGGGAGAACAATATTTGAACTCCAGAAAGAACAAGTACAACTCTTAAGTAAAGCCTTAATCATTGCTGTCATTCCAGGATTGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

247

Amino Acids

28.32

Weight (kDa)

9.23

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	86 - 229	1.5e-18	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	431
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	3 cut(s)	149, 307, 696
AflII	CTTAAG	2 cut(s)	170, 703
AgsI	TTSAA	6 cut(s)	94, 207, 346, 452, 605, 677
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	5 cut(s)	53, 106, 463, 493, 525
AluI	AGCT	5 cut(s)	53, 106, 463, 493, 525
AlwI	GGATC	1 cut(s)	580
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	198, 593
ApeKI	GCWGC	3 cut(s)	18, 124, 525
ApoI	RAATTY	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	202, 331, 349
AvaI	CYCGRG	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	30, 136, 512
BccI	CCATC	2 cut(s)	267, 332
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	238
BfaI	CTAG	3 cut(s)	107, 390, 630
BfrI	CTTAAG	2 cut(s)	170, 703
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	19, 125, 526
BlsI	GCNGC	3 cut(s)	20, 126, 527
Bme1390I	CCNGG	2 cut(s)	238, 735
BmeT110I	CYCGRG	1 cut(s)	431
BmrFI	CCNGG	2 cut(s)	238, 735
BpmI	CTGGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	30, 136, 512
BseYI	CCCAGC	1 cut(s)	472
BsgI	GTGCAG	1 cut(s)	511
BshFI	GGCC	2 cut(s)	200, 595
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	138, 238
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	200, 595
BsoBI	CYCGRG	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	166, 552, 572
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	200, 595
BspCNI	CTCAG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	327
BspPI	GGATC	1 cut(s)	580
BspTI	CTTAAG	2 cut(s)	170, 703
BsrDI	GCAATG	1 cut(s)	720
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	3 cut(s)	166, 552, 572
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	116, 419
BstAFI	CTTAAG	2 cut(s)	170, 703
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	119
BstEII	GGTNACC	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	3 cut(s)	169, 555, 575
BstMBI	GATC	3 cut(s)	166, 552, 572
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 247
BstNI	CCWGG	1 cut(s)	735
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	2 cut(s)	236, 733
BstV1I	GCAGC	3 cut(s)	30, 136, 512
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	200, 595
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	510
CciI	TCATGA	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	148, 306, 695
CviAII	CATG	7 cut(s)	60, 66, 214, 278, 295, 328, 576
CviQI	GTAC	3 cut(s)	148, 306, 695
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	3 cut(s)	168, 554, 574
DpnII	GATC	3 cut(s)	166, 552, 572
Eco130I	CCWWGG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	7 cut(s)	63, 69, 217, 281, 298, 331, 579
FatI	CATG	7 cut(s)	59, 65, 213, 277, 294, 327, 575
Fnu4HI	GCNGC	3 cut(s)	19, 125, 526
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	3 cut(s)	19, 125, 526
FspBI	CTAG	3 cut(s)	107, 390, 630
GluI	GCNGC	3 cut(s)	19, 125, 526
GsaI	CCCAGC	1 cut(s)	476
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	200, 595
HapII	CCGG	2 cut(s)	138, 238
Hin1II	CATG	7 cut(s)	63, 69, 217, 281, 298, 331, 579
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	138, 238
HphI	GGTGA	3 cut(s)	202, 331, 349
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	120, 226, 378
Hpy188III	TCNNGA	5 cut(s)	328, 335, 487, 615, 682
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	3 cut(s)	187, 559, 653
HpyCH4III	ACNGT	2 cut(s)	116, 419
HpyCH4V	TGCA	1 cut(s)	528
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 247
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	7 cut(s)	63, 69, 217, 281, 298, 331, 579
Kzo9I	GATC	3 cut(s)	166, 552, 572
LpnPI	CCDG	9 cut(s)	151, 251, 260, 348, 486, 522, 600, 695, 720
Lsp1109I	GCAGC	3 cut(s)	30, 136, 512
MaeI	CTAG	3 cut(s)	107, 390, 630
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	168, 554, 574
MboI	GATC	3 cut(s)	166, 552, 572
MboII	GAAGA	2 cut(s)	593, 668
MfeI	CAATTG	1 cut(s)	544
MluCI	AATT	4 cut(s)	79, 286, 544, 581
MnlI	CCTC	8 cut(s)	63, 114, 190, 230, 405, 427, 440, 562
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	5 cut(s)	171, 270, 468, 704, 716
MslI	CAYNNNNRTG	3 cut(s)	64, 185, 533
MspCI	CTTAAG	2 cut(s)	170, 703
MspI	CCGG	2 cut(s)	138, 238
MspR9I	CCNGG	2 cut(s)	238, 735
MunI	CAATTG	1 cut(s)	544
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	2 cut(s)	103, 247
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	3 cut(s)	166, 552, 572
NlaIII	CATG	7 cut(s)	63, 69, 217, 281, 298, 331, 579
NmuCI	GTSAC	1 cut(s)	319
PaeR7I	CTCGAG	1 cut(s)	431
PagI	TCATGA	1 cut(s)	327
PctI	GAATGC	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	733
PkrI	GCNGC	3 cut(s)	20, 126, 527
Psp6I	CCWGG	1 cut(s)	733
PspEI	GGTNACC	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	733
PspXI	VCTCGAGB	1 cut(s)	431
RsaI	GTAC	3 cut(s)	149, 307, 696
RsaNI	GTAC	3 cut(s)	148, 306, 695
RseI	CAYNNNNRTG	3 cut(s)	64, 185, 533
SaqAI	TTAA	5 cut(s)	171, 270, 468, 704, 716
SatI	GCNGC	3 cut(s)	19, 125, 526
Sau3AI	GATC	3 cut(s)	166, 552, 572
ScrFI	CCNGG	2 cut(s)	238, 735
Sfr274I	CTCGAG	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	431
SmiMI	CAYNNNNRTG	3 cut(s)	64, 185, 533
SmlI	CTYRAG	3 cut(s)	170, 431, 703
SmoI	CTYRAG	3 cut(s)	170, 431, 703
Sse9I	AATT	4 cut(s)	79, 286, 544, 581
SsiI	CCGC	1 cut(s)	151
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	3 cut(s)	107, 390, 630
StyD4I	CCNGG	2 cut(s)	236, 733
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	116, 419
TaqI	TCGA	3 cut(s)	432, 486, 563
TasI	AATT	4 cut(s)	79, 286, 544, 581
TatI	WGTACW	1 cut(s)	694
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	5 cut(s)	171, 270, 468, 704, 716
Tru9I	TTAA	5 cut(s)	171, 270, 468, 704, 716
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	18, 124, 525
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	5 cut(s)	45, 230, 283, 344, 669
TspGWI	ACGGA	2 cut(s)	22, 469
TspRI	CASTG	1 cut(s)	535
Vha464I	CTTAAG	2 cut(s)	170, 703
XapI	RAATTY	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	3 cut(s)	107, 390, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.