Rh2DG091600

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000133
Physical Location & Seq
Forward (+)
7115534 .. 7117639
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG091600.1

Sequence Viewer

Length: 543 bp
ATGGAAGACTATGTAGTATTAAGTTCTGTTTCACTGTTCCTGCTGCTATGTGGTGGTGTTAAAGCTTTCTACTCCATTTGGTGGAAACCCAAATTGCTAGAGAGGCGATTGAAGCAACAAGGAATTAGAGGCACTCCTTACACGCCCCTCATTGGGGACATGAAAGAGTTTGTGAGGCAGATAAAGGAAGCATGGTCCAAGCCAATGAGTCTAAATCACCAGATTGTTCCACGTGTCGACCCGTTTACCCTAGATACTGTGCAGAAATATGGGAAGATATCGATGTGTTGGGTTGGGACTACACCAAGACTGATCATCATGGACACTGAGATAGTGAAAGAAGTTCTGTCTAACAAGCTAGGTCACTTCCATAAGCCACCCCTAAACCCTCAAATTCTGATTCTAACAAAGGGTCTGTCAACTCTACATGGTGAGAAATGGGCTAAACACAGAAGGATAATCAATCCTGCTTTCCACCTAGAAAAGCTGAAGTGCATTTATAATGAACAAGTCCAGTCTTTAGACACTGGGCTGGTTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00908 ko01100 ko01110 map00908 map01100 map01110
Pfam Domains
Protein Families
p450

Protein Analysis

180

Amino Acids

20.81

Weight (kDa)

9.71

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 87 - 167 2.6e-12 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AccB7I CCANNNNNTGG 1 cut(s) 81
AccI GTMKAC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 509
AcvI CACGTG 1 cut(s) 233
AfiI CCNNNNNNNGG 4 cut(s) 81, 152, 153, 154
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 3 cut(s) 65, 358, 487
AluI AGCT 3 cut(s) 65, 358, 487
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 393
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 209, 443
AvaII GGWCC 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 30
BclI TGATCA 1 cut(s) 312
BfaI CTAG 4 cut(s) 98, 251, 359, 479
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 537
BmuI ACTGGG 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 233
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 152, 153, 154
Bse1I ACTGG 2 cut(s) 514, 532
BseCI ATCGAT 1 cut(s) 281
BseLI CCNNNNNNNGG 4 cut(s) 81, 152, 153, 154
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 514, 532
BseXI GCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 281
BshVI ATCGAT 1 cut(s) 281
BslFI GGGAC 2 cut(s) 170, 310
BslI CCNNNNNNNGG 4 cut(s) 81, 152, 153, 154
BsmFI GGGAC 2 cut(s) 170, 310
Bsp143I GATC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 281
BsrI ACTGG 2 cut(s) 514, 532
BssMI GATC 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 36, 259
BstBAI YACGTR 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 327
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 103, 112
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 281
BsuTUI ATCGAT 1 cut(s) 281
BtsIMutI CAGTG 3 cut(s) 32, 324, 525
Cfr13I GGNCC 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 281
CviAII CATG 4 cut(s) 160, 192, 319, 428
CviJI RGCY 7 cut(s) 65, 202, 358, 376, 443, 487, 532
CviKI_1 RGCY 7 cut(s) 65, 202, 358, 376, 443, 487, 532
DdeI CTNAG 1 cut(s) 327
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 509
Eco72I CACGTG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 279
FaeI CATG 4 cut(s) 163, 195, 322, 431
FaiI YATR 9 cut(s) 12, 49, 161, 193, 270, 320, 372, 429, 501
FaqI GGGAC 2 cut(s) 170, 310
FatI CATG 4 cut(s) 159, 191, 318, 427
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 4 cut(s) 98, 251, 359, 479
GluI GCNGC 1 cut(s) 44
Hin1II CATG 4 cut(s) 163, 195, 322, 431
HincII GTYRAC 2 cut(s) 238, 420
HindII GTYRAC 2 cut(s) 238, 420
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 2 cut(s) 208, 400
HphI GGTGA 2 cut(s) 209, 443
Hpy166II GTNNAC 3 cut(s) 238, 246, 420
Hpy188I TCNGA 1 cut(s) 399
Hpy8I GTNNAC 3 cut(s) 238, 246, 420
HpyAV CCTTC 1 cut(s) 447
HpyCH4III ACNGT 2 cut(s) 36, 259
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 262, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 112
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 4 cut(s) 163, 195, 322, 431
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 6 cut(s) 53, 233, 480, 513, 518, 527
Lsp1109I GCAGC 1 cut(s) 30
MaeI CTAG 4 cut(s) 98, 251, 359, 479
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 362
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 2 cut(s) 17, 286
MluCI AATT 3 cut(s) 92, 123, 393
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 5 cut(s) 96, 122, 158, 168, 399
MseI TTAA 3 cut(s) 20, 60, 541
MwoI GCNNNNNNNGC 2 cut(s) 103, 112
NdeII GATC 1 cut(s) 312
NlaIII CATG 4 cut(s) 163, 195, 322, 431
NmuCI GTSAC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 1 cut(s) 216
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
PpsI GAGTC 1 cut(s) 216
Ppu21I YACGTR 1 cut(s) 233
PsiI TTATAA 1 cut(s) 501
PspCI CACGTG 1 cut(s) 233
PspPI GGNCC 1 cut(s) 195
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 20, 60, 541
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 1 cut(s) 217
SetI ASST 6 cut(s) 67, 235, 360, 364, 480, 489
SinI GGWCC 1 cut(s) 195
Sse9I AATT 3 cut(s) 92, 123, 393
SspMI CTAG 4 cut(s) 98, 251, 359, 479
TaaI ACNGT 2 cut(s) 36, 259
TaiI ACGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 237, 281
TasI AATT 3 cut(s) 92, 123, 393
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 3 cut(s) 20, 60, 541
Tru9I TTAA 3 cut(s) 20, 60, 541
TscAI CASTG 3 cut(s) 39, 331, 532
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 2 cut(s) 176, 519
TspRI CASTG 3 cut(s) 39, 331, 532
Van91I CCANNNNNTGG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 4 cut(s) 98, 251, 359, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.