Rh5DG203400

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
22446282 .. 22449423
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG203400.1

Sequence Viewer

Length: 546 bp
ATGTCTTCACAAGACTTGATGCATGATTTTCGTAGGCCAGTATTAAACCCACTTTCCAAGTTGCTAGTAACGGGTCTTGCAAGCTATGAAGGTGAAAAATGGGCTAAACACAGGAGGATTGTCAACCCATCATTCCATGTAGAGAAATTAAAGGAATGGGAGAGCTTGGCGTCCAAAGAGGGCTCACCATGTCTATTGGATGTTTGGCCATCTCTACAACACTTGATGGCTGATGTGATTTCTCGAACATCATTTGGAAGTAGTTATCAGGAAGGAAGGAAAATATTTGAACTCCTTAAAGAGCAAGCAACGCTTGTAATAAATGCATTACAAAGTGTTTACATACCAGGATGGAGGTTTCTACCAACTAAGGTGAACAAGAGGATGAAGAAAATTGACAAAGAGGTAAAAGGTTTACTCAAGAGTATAATAAATAAAAGAGAGAAGGCCATTGGGGCAGGAGAAGCCTCTAAAGATGACTTATTAGGTGCACTTATGGAGTCAAAATTCAAGGACATCCAGGGTGATGGGAAGAGATGGAGATAG

Protein Analysis

181

Amino Acids

20.66

Weight (kDa)

9.71

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 21 - 172 4.8e-13 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 206
AcsI RAATTY 1 cut(s) 506
AcyI GRCGYC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 290, 511
AjnI CCWGG 2 cut(s) 346, 519
AluBI AGCT 2 cut(s) 84, 165
AluI AGCT 2 cut(s) 84, 165
Alw21I GWGCWC 1 cut(s) 493
Alw44I GTGCAC 1 cut(s) 489
AoxI GGCC 3 cut(s) 35, 206, 447
ApaLI GTGCAC 1 cut(s) 489
ApoI RAATTY 1 cut(s) 506
AsuHPI GGTGA 4 cut(s) 104, 177, 385, 536
BaeGI GKGCMC 1 cut(s) 493
BalI TGGCCA 1 cut(s) 208
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 493
BccI CCATC 6 cut(s) 136, 217, 220, 345, 521, 531
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 2 cut(s) 348, 521
BfaI CTAG 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 455
Bme1390I CCNGG 2 cut(s) 348, 521
BmrFI CCNGG 2 cut(s) 348, 521
BmsI GCATC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 520
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 2 cut(s) 348, 521
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 4 cut(s) 205, 356, 390, 516
BseNI ACTGG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 493
BshFI GGCC 3 cut(s) 37, 208, 449
BsiHKAI GWGCWC 1 cut(s) 493
BsnI GGCC 3 cut(s) 37, 208, 449
Bsp1286I GDGCHC 2 cut(s) 185, 493
BspANI GGCC 3 cut(s) 37, 208, 449
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 520
BssNI GRCGYC 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 348, 521
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 82, 306
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 4 cut(s) 205, 356, 390, 516
BstMWI GCNNNNNNNGC 3 cut(s) 310, 455, 464
BstNI CCWGG 2 cut(s) 348, 521
BstSCI CCNGG 2 cut(s) 346, 519
BstSLI GKGCMC 1 cut(s) 493
BstXI CCANNNNNNTGG 1 cut(s) 527
BsuRI GGCC 3 cut(s) 37, 208, 449
BtsCI GGATG 4 cut(s) 205, 356, 390, 516
Cac8I GCNNGC 2 cut(s) 82, 306
CseI GACGC 1 cut(s) 159
CviAII CATG 3 cut(s) 23, 137, 189
CviJI RGCY 9 cut(s) 37, 84, 104, 165, 183, 208, 230, 449, 467
CviKI_1 RGCY 9 cut(s) 37, 84, 104, 165, 183, 208, 230, 449, 467
DdeI CTNAG 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 346, 519
EcoT22I ATGCAT 2 cut(s) 24, 328
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 3 cut(s) 26, 140, 192
FaiI YATR 7 cut(s) 24, 87, 138, 190, 344, 428, 497
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 3 cut(s) 22, 136, 188
FokI GGATG 4 cut(s) 212, 363, 397, 503
FriOI GRGCYC 1 cut(s) 185
FspBI CTAG 1 cut(s) 65
HaeIII GGCC 3 cut(s) 37, 208, 449
HgaI GACGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 3 cut(s) 26, 140, 192
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 1 cut(s) 500
HphI GGTGA 4 cut(s) 104, 177, 385, 536
Hpy166II GTNNAC 5 cut(s) 124, 340, 376, 416, 491
Hpy188III TCNNGA 3 cut(s) 243, 269, 421
Hpy8I GTNNAC 5 cut(s) 124, 340, 376, 416, 491
HpyAV CCTTC 4 cut(s) 83, 266, 270, 439
HpyCH4V TGCA 4 cut(s) 22, 80, 326, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 310, 455, 464
HpyF3I CTNAG 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 3 cut(s) 26, 140, 192
LpnPI CCDG 8 cut(s) 51, 97, 254, 333, 360, 444, 506, 533
LweI GCATC 1 cut(s) 9
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 2 cut(s) 400, 544
MhlI GDGCHC 2 cut(s) 185, 493
MlsI TGGCCA 1 cut(s) 208
MluCI AATT 3 cut(s) 146, 393, 506
MluNI TGGCCA 1 cut(s) 208
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 6 cut(s) 108, 172, 348, 375, 397, 478
Mox20I TGGCCA 1 cut(s) 208
Mph1103I ATGCAT 2 cut(s) 24, 328
MscI TGGCCA 1 cut(s) 208
MseI TTAA 3 cut(s) 44, 149, 297
Msp20I TGGCCA 1 cut(s) 208
MspR9I CCNGG 2 cut(s) 348, 521
MvaI CCWGG 2 cut(s) 348, 521
MwoI GCNNNNNNNGC 3 cut(s) 310, 455, 464
NlaIII CATG 3 cut(s) 26, 140, 192
NsiI ATGCAT 2 cut(s) 24, 328
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 346, 519
PspGI CCWGG 2 cut(s) 346, 519
SaqAI TTAA 3 cut(s) 44, 149, 297
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 348, 521
SduI GDGCHC 2 cut(s) 185, 493
SetI ASST 8 cut(s) 86, 94, 167, 359, 375, 408, 415, 490
SfaNI GCATC 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 3 cut(s) 146, 393, 506
SspI AATATT 1 cut(s) 285
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 346, 519
TaqI TCGA 1 cut(s) 244
TasI AATT 3 cut(s) 146, 393, 506
Tru1I TTAA 3 cut(s) 44, 149, 297
Tru9I TTAA 3 cut(s) 44, 149, 297
TspDTI ATGAA 2 cut(s) 102, 401
VneI GTGCAC 1 cut(s) 489
XapI RAATTY 1 cut(s) 506
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 2 cut(s) 24, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.