Rroxscaffold_1G00051120

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
71617897 .. 71624364
6468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051120.1

Sequence Viewer

Length: 696 bp
ATGGAGTCAAAATTCAAGGACATCCAGGGAGATGGGAAGGTTGGGATGAGTATTGAAGATGTAATTGAGGAATGTAAGCTGTTTTACCTTGCTGGGCAAGAGACCACTTCAGTAGTGTTGCTGGTTTGGACAATGATATTACTTGGTCAAAATCAGAATTGGCAAGATCGAGCAAGACAAGAGGTAACCATGATTTTATATGAAGTTCTTCGATTGTACCCACCTGTGGATATTATCTCTCGAACCACTCACAAGAAAACACAACTCGGGAAATTCTCACTACCAGCTGGAGTCCAAGTCGACTTACCAACTCACGACCCGGCCGGAAAATGCAGCTCGACGTCGGCAAAGCTTCGGGCTTCTTTGGTTGAGTTCAGAACAAGCTCGCTGATCGATCCATGGGTGCTCATTCACCGTGACAAAGAACTGTGGGGTGATGATGCAAACGAGTTCAATCCTGAGAGGTTTTCGGAAGGAGTTTCCAAGGCAACAAAGAGCCAACTCTCATTTATCCCTTTCGGAGGTGGTCCCCTGATTTGCATTGGGCAAAACTTTGCTATGATAGAAGCGAAGTTGGCCTTGTCATTGATCTTGCTACACTTTGACTTCGAGCTTTCTCCATCTTATGCTCATGCTCCTTCTGCACCTATGATTAGACCACAGTATGGAGCTCCTATCATTTTACAGAAGCACTAA

Protein Analysis

231

Amino Acids

25.82

Weight (kDa)

6.08

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 11 - 64 1.1e-06 Cytochrome P450
p450 PF00067 136 - 208 7.8e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 665
AccI GTMKAC 1 cut(s) 300
AclWI GGATC 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 2 cut(s) 11, 272
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 226, 521, 665
AgsI TTSAA 3 cut(s) 16, 56, 454
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 7 cut(s) 79, 287, 336, 352, 384, 613, 671
AluI AGCT 7 cut(s) 79, 287, 336, 352, 384, 613, 671
Alw21I GWGCWC 2 cut(s) 408, 673
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 2 cut(s) 321, 576
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 2 cut(s) 11, 272
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 527
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 404, 446
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 673
Bbv12I GWGCWC 2 cut(s) 408, 673
BbvI GCAGC 1 cut(s) 345
BccI CCATC 2 cut(s) 26, 628
BciT130I CCWGG 1 cut(s) 26
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 95
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 26, 320
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 2 cut(s) 26, 320
BmsI GCATC 1 cut(s) 430
BpmI CTGGAG 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 25, 398, 483
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 521, 665
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 25, 398, 483
BseGI GGATG 2 cut(s) 21, 51
BseLI CCNNNNNNNGG 3 cut(s) 226, 521, 665
BseMII CTCAG 1 cut(s) 450
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 345
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 627
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 323, 578
BshVI ATCGAT 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 408, 673
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 320, 324
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 3 cut(s) 226, 521, 665
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 2 cut(s) 323, 578
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 408, 673
Bsp143I GATC 4 cut(s) 166, 390, 394, 588
Bsp19I CCATGG 1 cut(s) 398
BspANI GGCC 2 cut(s) 323, 578
BspCNI CTCAG 1 cut(s) 451
BspDI ATCGAT 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 25, 398, 483
BssMI GATC 4 cut(s) 166, 390, 394, 588
BssNI GRCGYC 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 398, 483
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 3 cut(s) 416, 429, 663
BstACI GRCGYC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 398
BstEII GGTNACC 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 21, 51
BstKTI GATC 4 cut(s) 169, 393, 397, 591
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 166, 390, 394, 588
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 575, 641
BstNI CCWGG 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 24, 318
BstV1I GCAGC 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 32
BstZI CGGCCG 1 cut(s) 321
Bsu15I ATCGAT 1 cut(s) 393
BsuRI GGCC 2 cut(s) 323, 578
BsuTUI ATCGAT 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 2 cut(s) 21, 51
Cac8I GCNNGC 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 527
ClaI ATCGAT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 217
CviAII CATG 3 cut(s) 190, 399, 632
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 459
DpnI GATC 4 cut(s) 168, 392, 396, 590
DpnII GATC 4 cut(s) 166, 390, 394, 588
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 671
EclXI CGGCCG 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 398, 483
Eco24I GRGCYC 1 cut(s) 673
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 527
Eco52I CGGCCG 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 671
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoO65I GGTNACC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 398, 483
EcoT38I GRGCYC 1 cut(s) 673
ErhI CCWWGG 2 cut(s) 398, 483
FaeI CATG 3 cut(s) 193, 402, 635
FaiI YATR 9 cut(s) 191, 199, 201, 400, 560, 627, 633, 650, 666
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 513
FatI CATG 3 cut(s) 189, 398, 631
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 2 cut(s) 8, 58
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 1 cut(s) 334
GluI GCNGC 1 cut(s) 334
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 323, 578
HapII CCGG 2 cut(s) 320, 324
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 3 cut(s) 193, 402, 635
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 2 cut(s) 5, 291
HpaII CCGG 2 cut(s) 320, 324
HphI GGTGA 2 cut(s) 404, 446
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 4 cut(s) 156, 377, 472, 521
Hpy188III TCNNGA 4 cut(s) 240, 268, 314, 458
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 2 cut(s) 343, 346
HpyAV CCTTC 3 cut(s) 31, 467, 648
HpyCH4III ACNGT 3 cut(s) 416, 429, 663
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 333, 443, 540, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 641
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 1 cut(s) 341
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 3 cut(s) 193, 402, 635
Kzo9I GATC 4 cut(s) 166, 390, 394, 588
LmnI GCTCC 3 cut(s) 640, 668, 676
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 1 cut(s) 430
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 184, 416
MalI GATC 4 cut(s) 168, 392, 396, 590
MboI GATC 4 cut(s) 166, 390, 394, 588
MboII GAAGA 2 cut(s) 68, 200
MhlI GDGCHC 2 cut(s) 408, 673
MluCI AATT 4 cut(s) 11, 63, 157, 272
MlyI GAGTC 2 cut(s) 14, 300
MnlI CCTC 4 cut(s) 61, 175, 456, 515
MroXI GAANNNNTTC 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 2 cut(s) 320, 324
MspR9I CCNGG 2 cut(s) 26, 320
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 575, 641
NciI CCSGG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 398
NdeII GATC 4 cut(s) 166, 390, 394, 588
NlaIII CATG 3 cut(s) 193, 402, 635
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 207
PflMI CCANNNNNTGG 1 cut(s) 665
PkrI GCNGC 1 cut(s) 335
PleI GAGTC 2 cut(s) 13, 299
PpsI GAGTC 2 cut(s) 13, 299
Psp124BI GAGCTC 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 529
PspPI GGNCC 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SacI GAGCTC 1 cut(s) 673
SalI GTCGAC 1 cut(s) 299
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 4 cut(s) 166, 390, 394, 588
Sau96I GGNCC 1 cut(s) 527
SchI GAGTC 2 cut(s) 14, 300
ScrFI CCNGG 2 cut(s) 26, 320
SduI GDGCHC 2 cut(s) 408, 673
SfaNI GCATC 1 cut(s) 430
SinI GGWCC 1 cut(s) 527
Sse9I AATT 4 cut(s) 11, 63, 157, 272
SstI GAGCTC 1 cut(s) 673
StyD4I CCNGG 2 cut(s) 24, 318
StyI CCWWGG 2 cut(s) 398, 483
TaaI ACNGT 3 cut(s) 416, 429, 663
TaiI ACGT 1 cut(s) 344
TaqI TCGA 7 cut(s) 169, 211, 241, 300, 338, 393, 609
TasI AATT 4 cut(s) 11, 63, 157, 272
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 527
XagI CCTNNNNNAGG 1 cut(s) 519
XapI RAATTY 2 cut(s) 11, 272
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 207
ZraI GACGTC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.