Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000133

Physical Location & Seq

Genomic Coordinates Reverse (-)

39101203 .. 39103413

Gene Structure 2211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1274300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGGAAGCCTCACTGGGCACTGTTGCCCTAACTGTTGTTTTGGTTAGCATTGTAGCGTGGGCATGGAGTTTGCTGAATTGGGTGTGGTTCAGGCCAAAGAAATTAGAAAGATACCTGAGGCAACAAGGCTTGGCGGGCAACTCCTACAGACTTTTGTTTGGAGACTTGAAAGAAAGCTCCATGATGCACAAACAAGCAAGATCCAAACCCATGAACCACCTCTCACATGATATAGTGCCACACATCCTCCCTTTTCTCCACCAGACGGTGATCACCTACGGTAAGAATTCTTTTATTTGGATGGGGCCCACCCTGAGGGTGAACATTTTGAATCCAGAAGATTTGAGAGATGTCTTAAACAGATATGATGATTTTCGGAAGCCACTTAGTAATCCAATTACAAAGGTACTTTCACAGGGACTCGTAAATATTGATGGTGAGAAATGGACGAAACACAGAAAGATTATCAACCCAGCATTCCATTTAGAGAAGCTAAAGTTTATGGTACCGACATTTTACCAAAGTTGTAGCGAGATGATTGACACATGGGAGAACTTGATGGTCAACGAGGGTTTATTGGAGTTGGATGTGTGGCCTTGGCTTCAGAGTTTGGCAGGCGATGTGATTTCTCGAGCTGCATTTGGAAGTAGCTATGAAGAGGGAAAGAAAATATTCCAACTGCTGAAAGAGCAAGCGAGAATTGGTGCAACACTTCTAAGAAGCGCAACAAGTGTCTATATCCCAGGATGGAGGTTTCTACCATCAAAAATGAACAAGAGGATGAAGGAAATTAATAAAGAGATAAGAGTTTTAATCATGGATATTATAAACAAAAGAGAAGGAACGATTAAGGCAGGTGACGACATTAATAAGGATGATTTATTGCGTATGCTTTTGGAGTCCAACTCCAAGGAAATTAAGGAACATGAGAACAACAAAAACGTTGGAATGAGTATTGAAGATGTGATTGAGGAGTGTAAGCTGTTTTATTTTGTCGGGCAAGAGACCACTTCAGCATTGCTTGTTTGGGCAATGGTTTTACTAAGCCACAATCAGAATTGGCAAAATCGAGCAAGAGAAGAAGTCTTGCAGGTTATTGGAAGCAATAACACACCAACCTTTGATGCGCTAATGCACCTACATGTTGTGACCATGGTCTTACTGGAAGTTCTGAGATTATACCCACCGGGTGTTGAGGTGTCCAGAATCACTCACAAGAAAACACAACTTGGGAAATTATCATTACCAGCTGGAGTCGACGTCTATGTACCCATACTTCTTGTTCACCATGACAAAGAATTGTGGGGTGACGATGCAGATGAGTTCAAACCAGAGAGGTTTTCAGGAGGAGTTTCAAAGGCAACAAACAACAGATTCACATACTTCCCCTTTGGCGCTGGTCCGCGGATTTGCATTGGCCAAAATTTTGCTATGATGGAAGCAAAACTGGCCTTATCATTGATCTTACAACATTTTACCTTCGAGCTCTCTTCATCCTATGCTCATGATCCTTTAACATACACAACTCTTCAACCTCAATCTGGTGCTCACATAATTTTACGTAAACGTCGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009987 GO:0016042 GO:0016053 GO:0016104 GO:0016105 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016709 GO:0017144 GO:0019741 GO:0019742 GO:0019745 GO:0019752 GO:0032787 GO:0042180 GO:0042181 GO:0042182 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902381 GO:1902382 GO:1902384 GO:1902386

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 ko04726 map00908 map01100 map01110 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

526

Amino Acids

60.27

Weight (kDa)

9.0

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	87 - 499	2.4e-88	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14610 AT3G14620 AT3G14630 AT3G14630 AT3G14640 AT3G14640 AT3G14650 AT3G14660 AT3G14660 AT3G14660 AT3G14680 AT3G14690 AT3G14690
fragaria_vesca	FvH4_1g08410 FvH4_2g31040 FvH4_3g17200 FvH4_3g17200 FvH4_3g17220 FvH4_3g17220 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17240 FvH4_3g17260 FvH4_3g17260 FvH4_3g17263 FvH4_3g17264 FvH4_3g17265 FvH4_3g17266 FvH4_5g18530 FvH4_5g19690 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g03990 FvH4_7g17900 FvH4_7g17900
malus_domestica	MD02G1088200.v1.1 MD03G1224800.v1.1 MD03G1224900.v1.1 MD03G1225000.v1.1 MD11G1274100.v1.1 MD11G1274200.v1.1 MD11G1274300.v1.1 MD11G1274500.v1.1 MD11G1274600.v1.1 MD15G1050400.v1.1 MD15G1050500.v1.1 MD15G1050600.v1.1 MD15G1050700.v1.1
prunus_persica	Prupe.1G404900_v2.0.a1 Prupe.1G404900_v2.0.a1 Prupe.4G152600_v2.0.a1 Prupe.4G152700_v2.0.a1 Prupe.4G152800_v2.0.a1 Prupe.4G152900_v2.0.a1 Prupe.4G153000_v2.0.a1 Prupe.7G201400_v2.0.a1 Prupe.7G201400_v2.0.a1
pyrus_communis	pycom03g17310 pycom03g17330 pycom11g21520 pycom11g21600 pycom11g24180 pycom11g24190 pycom11g24200 pycom11g24210 pycom15g04890
rosa_chinensis	RchiOBHm_Chr1g0327671 RchiOBHm_Chr1g0327711 RchiOBHm_Chr1g0327721 RchiOBHm_Chr2g0094501 RchiOBHm_Chr5g0028601 RchiOBHm_Chr5g0028611 RchiOBHm_Chr5g0028621 RchiOBHm_Chr5g0028661 RchiOBHm_Chr5g0028671 RchiOBHm_Chr5g0028701 RchiOBHm_Chr5g0028721 RchiOBHm_Chr5g0028741 RchiOBHm_Chr5g0028751 RchiOBHm_Chr5g0028771 RchiOBHm_Chr5g0028821 RchiOBHm_Chr6g0311761 RchiOBHm_Chr7g0204421
rosa_laevigata	RLG00000003223 RLG00000003462 RLG00000010376 RLG00000012452 RLG00000016496 RLG00000018531 RLG00000018532 RLG00000018536 RLG00000029973 RLG00000029976 RLG00000033105 RLG00000033106 RLG00000033107 RLG00000033109 RLG00000033110 RLG00000033111 RLG00000033112 RLG00000033113 RLG00000033114 RLG00000033116 RLG00000033124
rosa_multiflora	Rmu_co8029584.1_g000001 Rmu_co8159878.1_g000001 Rmu_co8310611.1_g000001 Rmu_sc0001000.1_g000004 Rmu_sc0001000.1_g000016 Rmu_sc0001575.1_g000020 Rmu_sc0001575.1_g000021 Rmu_sc0001575.1_g000022 Rmu_sc0001575.1_g000027 Rmu_sc0001575.1_g000035 Rmu_sc0001575.1_g000040 Rmu_sc0002888.1_g000039 Rmu_sc0003951.1_g000001 Rmu_sc0004359.1_g000045 Rmu_sc0005178.1_g000001 Rmu_sc0005178.1_g000002 Rmu_sc0005178.1_g000004 Rmu_sc0023855.1_g000001 Rmu_sc0024393.1_g000001 Rmu_sc0035326.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051080 Rroxscaffold_1G00051100 Rroxscaffold_1G00051110 Rroxscaffold_1G00051120 Rroxscaffold_1G00051150 Rroxscaffold_1G00051160 Rroxscaffold_1G00051170 Rroxscaffold_1G00051180 Rroxscaffold_2G00123610 Rroxscaffold_2G00147120 Rroxscaffold_3G00250540 Rroxscaffold_3G00253110 Rroxscaffold_3G00253120 Rroxscaffold_4G00322410 Rroxscaffold_4G00322440 Rroxscaffold_4G00322470 Rroxscaffold_7G00157330
rosa_rugosa	Rorug01G0069500 Rorug01G0069600 Rorug01G0069700 Rorug02G0044200 Rorug02G0227700 Rorug05G0109800 Rorug05G0109900 Rorug05G0110000 Rorug05G0110100 Rorug05G0110300 Rorug05G0110400 Rorug05G0110500 Rorug07G0083800 Rorug07G0083900.1 Rorug07G0103700
rosa_samantha	Rh1BG069000 Rh1BG069100 Rh1BG069200 Rh1CG084000 Rh1DG090700 Rh1DG090800 Rh1DG090900 Rh2AG092500 Rh2DG091600 Rh2DG309400 Rh5AG202100 Rh5AG202200 Rh5AG202500 Rh5AG202800 Rh5AG202900 Rh5CG220600 Rh5CG220700 Rh5CG220800 Rh5CG220900 Rh5CG221600 Rh5CG221900 Rh5CG222000 Rh5CG222100 Rh5DG203300 Rh5DG203400 Rh5DG203500 Rh5DG204100 Rh5DG204300 Rh5DG204400 Rh5DG204600 Rh6BG517600 Rh6CG523400 Rh6DG509100 Rh7AG213600 Rh7BG211400 Rh7DG220800
rosa_wichuraiana	Rw0G010630 Rw1G006750 Rw1G006770 Rw5G018300 Rw5G018310 Rw5G018330 Rw6G044090 Rw7G018510 Rw7G020290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AarI	CACCTGC	1 cut(s)	845
AatII	GACGTC	1 cut(s)	1263
Acc36I	ACCTGC	2 cut(s)	845, 1081
Acc65I	GGTACC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	1257
AccII	CGCG	1 cut(s)	1405
AciI	CCGC	3 cut(s)	134, 1403, 1405
AclI	AACGTT	1 cut(s)	942
AclWI	GGATC	2 cut(s)	195, 1502
AcoI	YGGCCR	1 cut(s)	1417
AcsI	RAATTY	2 cut(s)	286, 1423
AcuI	CTGAAG	2 cut(s)	587, 996
AcyI	GRCGYC	1 cut(s)	1260
AdeI	CACNNNGTG	1 cut(s)	1190
AfaI	GTAC	3 cut(s)	408, 507, 1269
AfiI	CCNNNNNNNGG	3 cut(s)	265, 315, 1541
AflIII	ACRYGT	1 cut(s)	1141
AgsI	TTSAA	6 cut(s)	169, 331, 959, 1327, 1356, 1532
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	7 cut(s)	177, 493, 635, 651, 982, 1250, 1486
AluI	AGCT	7 cut(s)	177, 493, 635, 651, 982, 1250, 1486
Alw21I	GWGCWC	2 cut(s)	1488, 1549
Alw26I	GTCTC	2 cut(s)	156, 998
AlwI	GGATC	2 cut(s)	195, 1502
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	5 cut(s)	92, 305, 593, 1417, 1449
ApaI	GGGCCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	286, 1423
AseI	ATTAAT	2 cut(s)	792, 867
Asp700I	GAANNNNTTC	1 cut(s)	671
Asp718I	GGTACC	1 cut(s)	505
AspLEI	GCGC	3 cut(s)	725, 1129, 1397
AspS9I	GGNCC	3 cut(s)	305, 306, 1400
AsuC2I	CCSGG	1 cut(s)	1188
AsuHPI	GGTGA	7 cut(s)	265, 280, 331, 449, 869, 1277, 1319
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	1400
AxyI	CCTNAGG	2 cut(s)	116, 314
BaeGI	GKGCMC	2 cut(s)	20, 309
BalI	TGGCCA	1 cut(s)	1419
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	2 cut(s)	309, 1488
BarI	GAAGNNNNNNTAC	2 cut(s)	1260, 1292
Bbv12I	GWGCWC	2 cut(s)	1488, 1549
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	6 cut(s)	295, 428, 553, 741, 769, 1429
BciT130I	CCWGG	1 cut(s)	744
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	1188
BcoDI	GTCTC	2 cut(s)	156, 998
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	1398
BfuAI	ACCTGC	2 cut(s)	845, 1081
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	2 cut(s)	744, 1188
Bme18I	GGWCC	1 cut(s)	1400
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	3 cut(s)	305, 306, 1400
BmiI	GGNNCC	3 cut(s)	306, 307, 507
BmrFI	CCNGG	2 cut(s)	744, 1188
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	174, 1114, 1303
BmuI	ACTGGG	1 cut(s)	23
BoxI	GACNNNNGTC	1 cut(s)	1154
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
BpmI	CTGGAG	1 cut(s)	1272
BpuMI	CCSGG	1 cut(s)	1188
BsaAI	YACGTR	1 cut(s)	1562
BsaHI	GRCGYC	1 cut(s)	1260
BsaI	GGTCTC	1 cut(s)	998
BsaJI	CCNNGG	5 cut(s)	596, 742, 909, 1152, 1403
BsaXI	ACNNNNNCTCC	4 cut(s)	231, 261, 1245, 1275
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 315, 1541
Bse1I	ACTGG	3 cut(s)	18, 1167, 1452
Bse21I	CCTNAGG	2 cut(s)	116, 314
Bse3DI	GCAATG	2 cut(s)	1016, 1038
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	5 cut(s)	596, 742, 909, 1152, 1403
BseGI	GGATG	7 cut(s)	243, 306, 592, 752, 786, 880, 1493
BseLI	CCNNNNNNNGG	3 cut(s)	265, 315, 1541
BseMI	GCAATG	2 cut(s)	1016, 1038
BseMII	CTCAG	3 cut(s)	107, 305, 1163
BseNI	ACTGG	3 cut(s)	18, 1167, 1452
BseRI	GAGGAG	2 cut(s)	986, 1362
BseSI	GKGCMC	2 cut(s)	20, 309
BseXI	GCAGC	1 cut(s)	622
BseYI	CCCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	1405
BshFI	GGCC	5 cut(s)	94, 307, 595, 1419, 1451
BshNI	GGYRCC	1 cut(s)	505
BsiHKAI	GWGCWC	2 cut(s)	1488, 1549
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	1187
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	265, 315, 1541
BsmAI	GTCTC	2 cut(s)	156, 998
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	5 cut(s)	94, 307, 595, 1419, 1451
Bso31I	GGTCTC	1 cut(s)	998
BsoBI	CYCGRG	1 cut(s)	630
Bsp120I	GGGCCC	1 cut(s)	305
Bsp1286I	GDGCHC	4 cut(s)	20, 309, 1488, 1549
Bsp143I	GATC	4 cut(s)	200, 270, 1461, 1507
Bsp19I	CCATGG	1 cut(s)	1152
BspACI	CCGC	3 cut(s)	134, 1403, 1405
BspANI	GGCC	5 cut(s)	94, 307, 595, 1419, 1451
BspCNI	CTCAG	3 cut(s)	108, 306, 1164
BspFNI	CGCG	1 cut(s)	1405
BspHI	TCATGA	1 cut(s)	1504
BspLI	GGNNCC	3 cut(s)	306, 307, 507
BspMI	ACCTGC	2 cut(s)	845, 1081
BspPI	GGATC	2 cut(s)	195, 1502
BspT107I	GGYRCC	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	998
BsrDI	GCAATG	2 cut(s)	1016, 1038
BsrI	ACTGG	3 cut(s)	18, 1167, 1452
BssECI	CCNNGG	5 cut(s)	596, 742, 909, 1152, 1403
BssMI	GATC	4 cut(s)	200, 270, 1461, 1507
BssNI	GRCGYC	1 cut(s)	1260
BssT1I	CCWWGG	3 cut(s)	596, 909, 1152
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	4 cut(s)	22, 34, 268, 281
Bst6I	CTCTTC	3 cut(s)	651, 1495, 1533
BstACI	GRCGYC	1 cut(s)	1260
BstBAI	YACGTR	1 cut(s)	1562
BstC8I	GCNNGC	3 cut(s)	136, 616, 693
BstDEI	CTNAG	6 cut(s)	116, 314, 386, 716, 1043, 1172
BstDSI	CCRYGG	2 cut(s)	1152, 1403
BstF5I	GGATG	7 cut(s)	243, 306, 592, 752, 786, 880, 1493
BstFNI	CGCG	1 cut(s)	1405
BstH2I	RGCGCY	1 cut(s)	1398
BstHHI	GCGC	3 cut(s)	725, 1129, 1397
BstKTI	GATC	4 cut(s)	203, 273, 1464, 1510
BstMAI	GTCTC	2 cut(s)	156, 998
BstMBI	GATC	4 cut(s)	200, 270, 1461, 1507
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 688, 1448
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	1 cut(s)	1145
BstPAI	GACNNNNGTC	1 cut(s)	1154
BstSCI	CCNGG	2 cut(s)	742, 1186
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	2 cut(s)	20, 309
BstSNI	TACGTA	1 cut(s)	1562
BstUI	CGCG	1 cut(s)	1405
BstV1I	GCAGC	1 cut(s)	622
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
Bsu36I	CCTNAGG	2 cut(s)	116, 314
BsuRI	GGCC	5 cut(s)	94, 307, 595, 1419, 1451
BtgI	CCRYGG	2 cut(s)	1152, 1403
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	7 cut(s)	243, 306, 592, 752, 786, 880, 1493
BtsIMutI	CAGTG	2 cut(s)	11, 18
BveI	ACCTGC	2 cut(s)	845, 1081
Cac8I	GCNNGC	3 cut(s)	136, 616, 693
CciI	TCATGA	1 cut(s)	1504
CfoI	GCGC	3 cut(s)	725, 1129, 1397
Cfr13I	GGNCC	3 cut(s)	305, 306, 1400
Cfr42I	CCGCGG	1 cut(s)	1406
Csp6I	GTAC	3 cut(s)	407, 506, 1268
CviQI	GTAC	3 cut(s)	407, 506, 1268
DdeI	CTNAG	6 cut(s)	116, 314, 386, 716, 1043, 1172
DpnI	GATC	4 cut(s)	202, 272, 1463, 1509
DpnII	GATC	4 cut(s)	200, 270, 1461, 1507
DraIII	CACNNNGTG	1 cut(s)	1190
EaeI	YGGCCR	1 cut(s)	1417
Eam1104I	CTCTTC	3 cut(s)	651, 1495, 1533
EarI	CTCTTC	3 cut(s)	651, 1495, 1533
Ecl136II	GAGCTC	1 cut(s)	1486
Eco105I	TACGTA	1 cut(s)	1562
Eco130I	CCWWGG	3 cut(s)	596, 909, 1152
Eco24I	GRGCYC	2 cut(s)	309, 1488
Eco31I	GGTCTC	1 cut(s)	998
Eco47I	GGWCC	1 cut(s)	1400
Eco53kI	GAGCTC	1 cut(s)	1486
Eco57I	CTGAAG	2 cut(s)	587, 996
Eco81I	CCTNAGG	2 cut(s)	116, 314
Eco88I	CYCGRG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	1486
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	3 cut(s)	596, 909, 1152
EcoT38I	GRGCYC	2 cut(s)	309, 1488
ErhI	CCWWGG	3 cut(s)	596, 909, 1152
FaqI	GGGAC	1 cut(s)	432
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	1257
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	7 cut(s)	230, 313, 599, 759, 793, 887, 1480
FriOI	GRGCYC	2 cut(s)	309, 1488
Fsp4HI	GCNGC	1 cut(s)	636
GlaI	GCGC	3 cut(s)	724, 1128, 1396
GluI	GCNGC	1 cut(s)	636
GsaI	CCCAGC	1 cut(s)	476
GsuI	CTGGAG	1 cut(s)	1272
HaeII	RGCGCY	1 cut(s)	1398
HaeIII	GGCC	5 cut(s)	94, 307, 595, 1419, 1451
HapII	CCGG	1 cut(s)	1187
HhaI	GCGC	3 cut(s)	725, 1129, 1397
Hin1I	GRCGYC	1 cut(s)	1260
Hin6I	GCGC	3 cut(s)	723, 1127, 1395
HinP1I	GCGC	3 cut(s)	723, 1127, 1395
HincII	GTYRAC	2 cut(s)	565, 1258
HindII	GTYRAC	2 cut(s)	565, 1258
HinfI	GANTC	6 cut(s)	331, 420, 899, 1206, 1254, 1374
HpaII	CCGG	1 cut(s)	1187
HphI	GGTGA	7 cut(s)	265, 280, 331, 449, 869, 1277, 1319
Hpy166II	GTNNAC	5 cut(s)	322, 565, 1258, 1285, 1565
Hpy188I	TCNGA	4 cut(s)	378, 606, 1056, 1173
Hpy188III	TCNNGA	5 cut(s)	335, 630, 1203, 1344, 1505
Hpy8I	GTNNAC	5 cut(s)	322, 565, 1258, 1285, 1565
Hpy99I	CGWCG	2 cut(s)	1262, 1572
HpyAV	CCTTC	3 cut(s)	778, 833, 1489
HpyCH4III	ACNGT	4 cut(s)	22, 34, 268, 281
HpyCH4IV	ACGT	4 cut(s)	942, 1260, 1561, 1567
HpyCH4V	TGCA	7 cut(s)	187, 638, 707, 1090, 1135, 1316, 1413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 688, 1448
HpyF3I	CTNAG	6 cut(s)	116, 314, 386, 716, 1043, 1172
HpySE526I	ACGT	4 cut(s)	942, 1260, 1561, 1567
Hsp92I	GRCGYC	1 cut(s)	1260
HspAI	GCGC	3 cut(s)	723, 1127, 1395
KpnI	GGTACC	1 cut(s)	509
Ksp22I	TGATCA	1 cut(s)	270
KspI	CCGCGG	1 cut(s)	1406
Kzo9I	GATC	4 cut(s)	200, 270, 1461, 1507
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	3 cut(s)	174, 1114, 1303
MaeII	ACGT	4 cut(s)	942, 1260, 1561, 1567
MaeIII	GTNAC	3 cut(s)	857, 1147, 1307
MalI	GATC	4 cut(s)	202, 272, 1463, 1509
MboI	GATC	4 cut(s)	200, 270, 1461, 1507
MboII	GAAGA	6 cut(s)	350, 668, 971, 1091, 1482, 1520
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	4 cut(s)	20, 309, 1488, 1549
MlsI	TGGCCA	1 cut(s)	1419
MluNI	TGGCCA	1 cut(s)	1419
MlyI	GAGTC	3 cut(s)	414, 908, 1263
MmeI	TCCRAC	4 cut(s)	564, 700, 925, 927
Mox20I	TGGCCA	1 cut(s)	1419
MroXI	GAANNNNTTC	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	1419
MseI	TTAA	7 cut(s)	356, 792, 812, 849, 867, 918, 1514
MslI	CAYNNNNRTG	1 cut(s)	1140
Msp20I	TGGCCA	1 cut(s)	1419
MspA1I	CMGCKG	2 cut(s)	1250, 1405
MspI	CCGG	1 cut(s)	1187
MspR9I	CCNGG	2 cut(s)	744, 1188
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	744
MvnI	CGCG	1 cut(s)	1405
MwoI	GCNNNNNNNGC	3 cut(s)	135, 688, 1448
NciI	CCSGG	1 cut(s)	1188
NcoI	CCATGG	1 cut(s)	1152
NdeII	GATC	4 cut(s)	200, 270, 1461, 1507
NlaIV	GGNNCC	3 cut(s)	306, 307, 507
NmuCI	GTSAC	3 cut(s)	857, 1147, 1307
NspI	RCATGY	1 cut(s)	1145
PaeR7I	CTCGAG	1 cut(s)	630
PagI	TCATGA	1 cut(s)	1504
PaqCI	CACCTGC	1 cut(s)	845
PciI	ACATGT	1 cut(s)	1141
PcsI	WCGNNNNNNNCGW	1 cut(s)	1567
PctI	GAATGC	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	331, 1206, 1374
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	3 cut(s)	414, 907, 1262
PpsI	GAGTC	3 cut(s)	414, 907, 1262
Ppu21I	YACGTR	1 cut(s)	1562
PscI	ACATGT	1 cut(s)	1141
PshAI	GACNNNNGTC	1 cut(s)	1154
PshBI	ATTAAT	2 cut(s)	792, 867
PsiI	TTATAA	1 cut(s)	827
Psp124BI	GAGCTC	1 cut(s)	1488
Psp1406I	AACGTT	1 cut(s)	942
Psp6I	CCWGG	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	3 cut(s)	306, 307, 507
PspOMI	GGGCCC	1 cut(s)	305
PspPI	GGNCC	3 cut(s)	305, 306, 1400
PsuI	RGATCY	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	1250
RsaI	GTAC	3 cut(s)	408, 507, 1269
RsaNI	GTAC	3 cut(s)	407, 506, 1268
RseI	CAYNNNNRTG	1 cut(s)	1140
SacI	GAGCTC	1 cut(s)	1488
SacII	CCGCGG	1 cut(s)	1406
SalI	GTCGAC	1 cut(s)	1256
SaqAI	TTAA	7 cut(s)	356, 792, 812, 849, 867, 918, 1514
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	4 cut(s)	200, 270, 1461, 1507
Sau96I	GGNCC	3 cut(s)	305, 306, 1400
SchI	GAGTC	3 cut(s)	414, 908, 1263
ScrFI	CCNGG	2 cut(s)	744, 1188
SduI	GDGCHC	4 cut(s)	20, 309, 1488, 1549
SfaNI	GCATC	3 cut(s)	174, 1114, 1303
SfcI	CTRYAG	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	630
Sfr303I	CCGCGG	1 cut(s)	1406
SgrBI	CCGCGG	1 cut(s)	1406
SinI	GGWCC	1 cut(s)	1400
SlaI	CTCGAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	1140
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
SnaBI	TACGTA	1 cut(s)	1562
SsiI	CCGC	3 cut(s)	134, 1403, 1405
SspI	AATATT	2 cut(s)	430, 672
SstI	GAGCTC	1 cut(s)	1488
StyD4I	CCNGG	2 cut(s)	742, 1186
StyI	CCWWGG	3 cut(s)	596, 909, 1152
TaaI	ACNGT	4 cut(s)	22, 34, 268, 281
TaiI	ACGT	4 cut(s)	945, 1263, 1564, 1570
TaqI	TCGA	4 cut(s)	631, 1069, 1257, 1482
TfiI	GAWTC	3 cut(s)	331, 1206, 1374
Tru1I	TTAA	7 cut(s)	356, 792, 812, 849, 867, 918, 1514
Tru9I	TTAA	7 cut(s)	356, 792, 812, 849, 867, 918, 1514
TscAI	CASTG	2 cut(s)	18, 25
TseFI	GTSAC	3 cut(s)	857, 1147, 1307
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	3 cut(s)	857, 1147, 1307
TspDTI	ATGAA	5 cut(s)	227, 669, 785, 797, 1482
TspRI	CASTG	2 cut(s)	18, 25
VpaK11BI	GGWCC	1 cut(s)	1400
VspI	ATTAAT	2 cut(s)	792, 867
XapI	RAATTY	2 cut(s)	286, 1423
XceI	RCATGY	1 cut(s)	1145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1159
XhoI	CTCGAG	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	1257
XmnI	GAANNNNTTC	1 cut(s)	671
ZraI	GACGTC	1 cut(s)	1261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.