MD11G1166800.v1.1

germin-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
17665622 .. 17666781
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1166800.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGCGTCTAGAACTTCCAGCCTCAAATTCCTCTCACTATTAAGTTTTTTATTTGCCATTGTTCAAATGGCAATGGCTGGAGACCCGGACATTTTTACTGACCTTATAGTGCCTCCAAATGCAAACGGTGTAGGTGAACTTTTTGTGTTTCCCAAGGGACTTGCGCACTTCTTGTACAATGCTGATGCAGAAAACCCAGCCACATCAATTTTTATTTGGAAGTGCAAATGCAGGAACTGTATCAATCCCCTCCACCTTGTTCAACACGGGCATCGACGACAATGTGTTGGCTATCTCCTTCAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.37

Weight (kDa)

7.72

Isoelectric Point (pI)

23.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 165
AcsI RAATTY 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 3 cut(s) 65, 263, 302
Alw26I GTCTC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 237
ApoI RAATTY 1 cut(s) 26
AspLEI GCGC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 146
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 2 cut(s) 175, 280
BpmI CTGGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 78
BsrGI TGTACA 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 128, 239
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 174
BstHHI GCGC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 237
CfoI GCGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 4 cut(s) 21, 77, 200, 291
CviKI_1 RGCY 4 cut(s) 21, 77, 200, 291
CviQI GTAC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 1 cut(s) 107
FaqI GGGAC 1 cut(s) 171
FspBI CTAG 1 cut(s) 9
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 1 cut(s) 165
GsaI CCCAGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 9, 302
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 128, 239
HpyCH4V TGCA 4 cut(s) 122, 188, 225, 231
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 164
LpnPI CCDG 5 cut(s) 31, 63, 99, 210, 217
LweI GCATC 2 cut(s) 175, 280
MaeI CTAG 1 cut(s) 9
MluCI AATT 2 cut(s) 26, 207
MnlI CCTC 4 cut(s) 32, 41, 123, 260
MseI TTAA 1 cut(s) 41
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 86
NciI CCSGG 1 cut(s) 86
NsbI TGCGCA 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 237
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 86
SetI ASST 3 cut(s) 105, 136, 258
SfaNI GCATC 2 cut(s) 175, 280
Sse9I AATT 2 cut(s) 26, 207
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 128, 239
TaqI TCGA 1 cut(s) 274
TasI AATT 2 cut(s) 26, 207
TatI WGTACW 1 cut(s) 174
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
XapI RAATTY 1 cut(s) 26
XbaI TCTAGA 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.