Rorug05G0232200

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000346
Physical Location & Seq
Reverse (-)
24198683 .. 24199450
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0232200.1

Sequence Viewer

Length: 417 bp
ATGGGGTCTAAAAGACGTATGAGCGTTTTGGTTGTCATTTTCATGGCGTTGGTTAGCTATTCTCAAGCATACAAGTTCTTTGTGGGTGGCAAAGATGGGTGGATAGTGAACCCGTCTGAGAACTTCAATCACTGGGCCGAAAGGCATAGATTTGAACGCTCCGGTCCATTCTTTTTCATCAGCGGCAATGCCAACGATTGCCAAAATGGTCAGAAACTGATAGTAGTAGTTTTGGCCCTAAGACACAAATCTGACCACGGCGATGCTCCACTGCTACCCTCTCCTTCTCCGGTGGCTTCTCCTAACTCTGGTAGTAATCCATCGGATTTAAACAACAAACCAACTCCACCACGGAAGGAGAATTCGGAGTCAGTGCTCCGTTCTAAAGGATCAGATGTTGGATTGGTACGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

138

Amino Acids

15.18

Weight (kDa)

9.84

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 361
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 2 cut(s) 127, 155
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
Alw21I GWGCWC 1 cut(s) 378
AlwI GGATC 1 cut(s) 397
AlwNI CAGNNNCTG 1 cut(s) 217
AoxI GGCC 2 cut(s) 135, 234
ApoI RAATTY 1 cut(s) 361
AspS9I GGNCC 3 cut(s) 135, 164, 235
AvaII GGWCC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 378
BccI CCATC 2 cut(s) 89, 328
BceAI ACGGC 1 cut(s) 274
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 135, 164, 235
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 256, 350
BsaWI WCCGGW 2 cut(s) 161, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 256, 350
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 137
BshFI GGCC 2 cut(s) 137, 236
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 2 cut(s) 162, 290
BslI CCNNNNNNNGG 1 cut(s) 308
BsnI GGCC 2 cut(s) 137, 236
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 1 cut(s) 389
BspACI CCGC 1 cut(s) 183
BspANI GGCC 2 cut(s) 137, 236
BspCNI CTCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 193
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 256, 350
BssMI GATC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 117, 239
BstDSI CCRYGG 2 cut(s) 256, 350
BstKTI GATC 1 cut(s) 392
BstMBI GATC 1 cut(s) 389
BsuRI GGCC 2 cut(s) 137, 236
BtgI CCRYGG 2 cut(s) 256, 350
BtgZI GCGATG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 3 cut(s) 130, 269, 378
CaiI CAGNNNCTG 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 135, 164, 235
Csp6I GTAC 1 cut(s) 407
CviAII CATG 1 cut(s) 43
CviJI RGCY 4 cut(s) 57, 137, 236, 296
CviKI_1 RGCY 4 cut(s) 57, 137, 236, 296
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 117, 239
DpnI GATC 1 cut(s) 391
DpnII GATC 1 cut(s) 389
DraI TTTAAA 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 361
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 20, 44, 70, 147, 415
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 184
HaeIII GGCC 2 cut(s) 137, 236
HapII CCGG 2 cut(s) 162, 290
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 368
HpaII CCGG 2 cut(s) 162, 290
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 6 cut(s) 118, 213, 253, 325, 367, 394
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 294, 349
HpyCH4IV ACGT 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 117, 239
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 389
LmnI GCTCC 3 cut(s) 164, 271, 381
LpnPI CCDG 4 cut(s) 118, 175, 294, 303
LweI GCATC 1 cut(s) 253
MaeII ACGT 1 cut(s) 16
MalI GATC 1 cut(s) 391
MboI GATC 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 1 cut(s) 361
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 1 cut(s) 289
MseI TTAA 1 cut(s) 329
MslI CAYNNNNRTG 2 cut(s) 41, 261
MspA1I CMGCKG 1 cut(s) 183
MspI CCGG 2 cut(s) 162, 290
NdeII GATC 1 cut(s) 389
NlaIII CATG 1 cut(s) 46
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PspPI GGNCC 3 cut(s) 135, 164, 235
PstNI CAGNNNCTG 1 cut(s) 217
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 2 cut(s) 41, 261
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 1 cut(s) 389
Sau96I GGNCC 3 cut(s) 135, 164, 235
SchI GAGTC 1 cut(s) 377
SduI GDGCHC 1 cut(s) 378
SetI ASST 2 cut(s) 19, 59
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 41, 261
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 361
SsiI CCGC 1 cut(s) 183
TaiI ACGT 1 cut(s) 19
TasI AATT 1 cut(s) 361
TauI GCSGC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 3 cut(s) 137, 276, 378
TspDTI ATGAA 2 cut(s) 31, 166
TspGWI ACGGA 2 cut(s) 367, 368
TspRI CASTG 3 cut(s) 137, 276, 378
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.