RLG00000034448

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000346
Physical Location & Seq
Forward (+)
42834567 .. 42835080
514 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034448

Sequence Viewer

Length: 390 bp
ATGGCCGGAGATCCAGACATTCTTAGTGACTTCATAGCGCCTCCAAATGGAACAGTAGACGGAAACTTCTTCACATACACTGGCATGCGTGTTCTTGTTGGAGGAGACGAGCCCAAAAACTTCACAGTACTGAAGGCAACCTCGCCAGAGTTCCCTGCCCTTAATGGCCAGAGTGTTTCATATGCCGTCCTTGAATTCCCAGCTGGCACTACTAACCCACCACACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTATTGACGGAACTGTGTCAATTCCCGCCACTTTGTTCACCACCAACATTGATGATAATGTCTTGGCTTTGTCCTTTAAGACTGATGTAGCTACCATTCAAAAGCTTAAGGCAGGTCTTAATCCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

130

Amino Acids

13.69

Weight (kDa)

4.71

Isoelectric Point (pI)

23.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 37 - 92 8.2e-08 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 57
AciI CCGC 1 cut(s) 282
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 2 cut(s) 3, 166
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 47
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 2 cut(s) 194, 356
AluBI AGCT 4 cut(s) 203, 247, 347, 361
AluI AGCT 4 cut(s) 203, 247, 347, 361
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 5
AoxI GGCC 2 cut(s) 3, 166
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 286
BalI TGGCCA 1 cut(s) 168
BanII GRGCYC 2 cut(s) 114, 249
Bbv12I GWGCWC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 359
BlpI GCTNAGC 1 cut(s) 243
BmcAI AGTACT 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 117, 239
BseYI CCCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 5, 168
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 2 cut(s) 5, 168
Bsp1286I GDGCHC 2 cut(s) 114, 249
Bsp143I GATC 1 cut(s) 10
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 1 cut(s) 282
BspANI GGCC 2 cut(s) 5, 168
BspCNI CTCAG 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 362
BsrI ACTGG 1 cut(s) 85
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 3 cut(s) 55, 127, 271
Bst6I CTCTTC 1 cut(s) 257
BstAFI CTTAAG 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 86, 205
BstDEI CTNAG 2 cut(s) 23, 243
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 2 cut(s) 5, 168
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 86, 205
CfoI GCGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 128
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 2 cut(s) 85, 387
CviJI RGCY 9 cut(s) 5, 112, 168, 203, 247, 323, 347, 361, 385
CviKI_1 RGCY 9 cut(s) 5, 112, 168, 203, 247, 323, 347, 361, 385
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 2 cut(s) 23, 243
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 3, 166
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 114, 249
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 194
EcoT38I GRGCYC 2 cut(s) 114, 249
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 2 cut(s) 88, 390
FaiI YATR 6 cut(s) 35, 76, 86, 181, 183, 388
FatI CATG 2 cut(s) 84, 386
FauI CCCGC 1 cut(s) 289
FauNDI CATATG 1 cut(s) 181
FblI GTMKAC 1 cut(s) 57
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 2 cut(s) 114, 249
GlaI GCGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 2 cut(s) 5, 168
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 88, 390
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 359
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 58, 294
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 2 cut(s) 58, 294
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 3 cut(s) 55, 127, 271
HpyF3I CTNAG 2 cut(s) 23, 243
Hsp92II CATG 2 cut(s) 88, 390
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 9 cut(s) 19, 27, 66, 159, 168, 182, 189, 213, 354
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 61, 244
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 114, 249
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 2 cut(s) 194, 276
MluNI TGGCCA 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 5 cut(s) 51, 95, 151, 243, 260
Mox20I TGGCCA 1 cut(s) 168
MscI TGGCCA 1 cut(s) 168
MseI TTAA 4 cut(s) 162, 333, 363, 375
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 203
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 181
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 88, 390
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 88
PaeI GCATGC 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 162, 333, 363, 375
Sau3AI GATC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 129
SduI GDGCHC 2 cut(s) 114, 249
SetI ASST 6 cut(s) 143, 205, 249, 349, 363, 373
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 88
Sse9I AATT 2 cut(s) 194, 276
SsiI CCGC 1 cut(s) 282
SstI GAGCTC 1 cut(s) 249
TaaI ACNGT 3 cut(s) 55, 127, 271
TasI AATT 2 cut(s) 194, 276
TatI WGTACW 1 cut(s) 127
Tru1I TTAA 4 cut(s) 162, 333, 363, 375
Tru9I TTAA 4 cut(s) 162, 333, 363, 375
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 22, 168
TspGWI ACGGA 2 cut(s) 75, 279
TspRI CASTG 1 cut(s) 85
Vha464I CTTAAG 1 cut(s) 362
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.