Rh5CG346100

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000346
Physical Location & Seq
Reverse (-)
39918215 .. 39926513
8299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG346100.1

Sequence Viewer

Length: 501 bp
ATGGCTTCAAGAACTTCCAGCCTCAAATACTTCTCACTACTAATTTGTTCACTAGCCATTGTTCAAATGACATTGGCAGGAGATCCAGACATTCTTAGTGACATTGTTGCGCCTCCAAATGGAACAGTAGATGGAAACTTCTTCACATACACCGGCATGCGTGTTCTTGTTGGAGGAGACGAGCCCAAAACCTTTCACACAGTACTGAATGCAACCTCGGCTGAGTTCCCTGCTCTTAATGGGCAGAGTGTTTCATATGCCGTCCATATATTCCCAGCTGGCACTGCTAACCCACCACACACTCATCCTCGCTCCGCTGAGCTCCTCTTCCTTGTTGACGGAAGCCTTGAAGTTGGCTTTGTTGACACAAAGAATAACCTCTTTACTCAGACTCTTCAGGCAGGAAAAGTGAGTGGGGCTCGCGTAAATGGTCACACAGACTCTTTTATTTGTGCTGAGAGACCAAAGACCACCCAAATGCCACAGAAAACAAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

166

Amino Acids

17.74

Weight (kDa)

6.17

Isoelectric Point (pI)

23.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 68 - 137 1.5e-13 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 423
AciI CCGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 3 cut(s) 9, 65, 350
AluBI AGCT 2 cut(s) 278, 322
AluI AGCT 2 cut(s) 278, 322
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 171, 454
AlwI GGATC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 112
BanII GRGCYC 3 cut(s) 186, 324, 421
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 171, 454
BfaI CTAG 1 cut(s) 53
BlpI GCTNAGC 1 cut(s) 318
BmcAI AGTACT 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bpu1102I GCTNAGC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 4 cut(s) 213, 309, 401, 447
BseRI GAGGAG 2 cut(s) 189, 314
BseYI CCCAGC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 171, 454
BsmBI CGTCTC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 454
Bsp1286I GDGCHC 3 cut(s) 186, 324, 421
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 1 cut(s) 315
BspCNI CTCAG 4 cut(s) 214, 310, 400, 448
BspFNI CGCG 1 cut(s) 423
BspPI GGATC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 82
Bst4CI ACNGT 2 cut(s) 127, 202
Bst6I CTCTTC 2 cut(s) 332, 399
BstC8I GCNNGC 3 cut(s) 158, 280, 421
BstDEI CTNAG 5 cut(s) 95, 222, 318, 387, 456
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 2 cut(s) 171, 454
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 218, 284
BstNSI RCATGY 1 cut(s) 160
BstUI CGCG 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 3 cut(s) 158, 280, 421
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 152
Csp6I GTAC 1 cut(s) 203
CviAII CATG 1 cut(s) 157
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 5 cut(s) 95, 222, 318, 387, 456
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 332, 399
EarI CTCTTC 2 cut(s) 332, 399
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 3 cut(s) 186, 324, 421
Eco31I GGTCTC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 322
EcoT38I GRGCYC 3 cut(s) 186, 324, 421
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 1 cut(s) 160
FaiI YATR 6 cut(s) 148, 158, 256, 258, 267, 269
FatI CATG 1 cut(s) 156
FauNDI CATATG 1 cut(s) 256
FokI GGATG 1 cut(s) 291
FriOI GRGCYC 3 cut(s) 186, 324, 421
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 278
HapII CCGG 1 cut(s) 153
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 2 cut(s) 337, 364
HindII GTYRAC 2 cut(s) 337, 364
HinfI GANTC 2 cut(s) 391, 440
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 3 cut(s) 50, 337, 364
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 2 cut(s) 9, 86
Hpy8I GTNNAC 3 cut(s) 50, 337, 364
HpyCH4III ACNGT 2 cut(s) 127, 202
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 284
HpyF3I CTNAG 5 cut(s) 95, 222, 318, 387, 456
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 317, 327
LpnPI CCDG 9 cut(s) 31, 63, 99, 166, 243, 264, 288, 383, 387
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 98, 431
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 133, 319, 386
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 186, 324, 421
MluCI AATT 1 cut(s) 42
MlyI GAGTC 2 cut(s) 385, 434
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 7 cut(s) 32, 123, 167, 226, 318, 335, 389
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 2 cut(s) 155, 476
MspA1I CMGCKG 2 cut(s) 278, 317
MspI CCGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 214
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 218, 284
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 2 cut(s) 98, 431
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PctI GAATGC 1 cut(s) 214
PleI GAGTC 2 cut(s) 385, 434
PpsI GAGTC 2 cut(s) 385, 434
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 155, 476
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 2 cut(s) 385, 434
SduI GDGCHC 3 cut(s) 186, 324, 421
SetI ASST 5 cut(s) 194, 218, 280, 324, 381
SmiMI CAYNNNNRTG 2 cut(s) 155, 476
SphI GCATGC 1 cut(s) 160
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 315
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 324
TaaI ACNGT 2 cut(s) 127, 202
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 2 cut(s) 98, 431
Tsp45I GTSAC 2 cut(s) 98, 431
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 1 cut(s) 289
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 53
ZrmI AGTACT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.