Prupe.6G133300_v2.0.a1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000346
Physical Location & Seq
Forward (+)
10474787 .. 10475413
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G133300.1

Sequence Viewer

Length: 627 bp
ATGGCCTCAAGAACTTCCACCCTAAAGTTCTTCTCACTACTAATTTCTTCATTTGCCATTGTTCAAATGGCAATGGCAGGAGATCCGGACATTCTTACTGACTTCGTAGTTCCGCCAAATGGAACAGTAGATGGAAACTTCTTCACATACACCGGCTTTCGTGTTCTTGTTGGAGGTGCTCCTCCCACAGCCTTCAAGGTATTGAAGGCAAGCTTGGCAGAGTTCCCTGCTCTTAATGGGCAGAGTGTTTCCTACGCTGTCCTTCAATTCCCTTCTGGCACTACCAACCCCCCACACACTCATCCGCGCTCGGCTGAGCTGCTTTTCCTTATTCAGGGTTCCCTTCAAGTGGGCTTTGTTGACACCAAAAACAACCTCTTTACGCAGACGCTTCAGGTGGGTGATCTGTTTGTGTTTCCCAAGGGACTTGTGCACTTTCAGTACAATGCTGATTCACAAAAGCCAGCTCTAGCAATTTCTGCCTTTGGAAGTGCAAATGCTGGACTTGTATCCATTCCCAGCACCTTGTTCACCACCGGTATTGACGACAATGTCTTGGCCATATCCTTCAAGACTGATGTAGCCACCATCCAAAAGCTCAAGGCTGGTCTTGCTCCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

22.05

Weight (kDa)

7.99

Isoelectric Point (pI)

19.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 551
AccII CGCG 1 cut(s) 307
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 2 cut(s) 113, 305
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 558
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 3 cut(s) 119, 334, 349
AgeI ACCGGT 1 cut(s) 536
AgsI TTSAA 6 cut(s) 65, 196, 205, 266, 347, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 4 cut(s) 213, 319, 467, 598
AluI AGCT 4 cut(s) 213, 319, 467, 598
Alw21I GWGCWC 2 cut(s) 181, 435
Alw44I GTGCAC 1 cut(s) 431
AlwI GGATC 1 cut(s) 77
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 2 cut(s) 3, 558
ApaLI GTGCAC 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 319
AsiGI ACCGGT 1 cut(s) 536
AspLEI GCGC 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 413, 523
BaeGI GKGCMC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 560
Bbv12I GWGCWC 2 cut(s) 181, 435
BbvI GCAGC 1 cut(s) 306
BccI CCATC 2 cut(s) 125, 596
BciVI GTATCC 1 cut(s) 520
BfaI CTAG 1 cut(s) 470
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 1 cut(s) 320
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 340
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 420
BsaWI WCCGGW 2 cut(s) 85, 536
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 334, 349
Bse118I RCCGGY 2 cut(s) 152, 536
Bse3DI GCAATG 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 2 cut(s) 301, 588
BseLI CCNNNNNNNGG 3 cut(s) 119, 334, 349
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 5, 560
BshTI ACCGGT 1 cut(s) 536
BsiHKAI GWGCWC 2 cut(s) 181, 435
BsiSI CCGG 3 cut(s) 86, 153, 537
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 3 cut(s) 119, 334, 349
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 2 cut(s) 5, 560
Bsp1286I GDGCHC 2 cut(s) 181, 435
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 82, 403
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 2 cut(s) 113, 305
BspANI GGCC 2 cut(s) 5, 560
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 2 cut(s) 152, 536
BssAI RCCGGY 2 cut(s) 152, 536
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 2 cut(s) 82, 403
BssT1I CCWWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 211, 465
BstDEI CTNAG 1 cut(s) 315
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 301, 588
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 2 cut(s) 85, 406
BstMBI GATC 2 cut(s) 82, 403
BstMWI GCNNNNNNNGC 3 cut(s) 215, 479, 611
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 2 cut(s) 5, 560
BtsCI GGATG 2 cut(s) 301, 588
Cac8I GCNNGC 2 cut(s) 211, 465
CfoI GCGC 1 cut(s) 309
Cfr10I RCCGGY 2 cut(s) 152, 536
CseI GACGC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 442
CspAI ACCGGT 1 cut(s) 536
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 1 cut(s) 624
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 84, 405
DpnII GATC 2 cut(s) 82, 403
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
EaeI YGGCCR 1 cut(s) 558
EciI GGCGGA 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 1 cut(s) 627
FaiI YATR 3 cut(s) 148, 563, 625
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 438
FatI CATG 1 cut(s) 623
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 2 cut(s) 288, 575
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 1 cut(s) 470
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 320
GsaI CCCAGC 1 cut(s) 522
HaeIII GGCC 2 cut(s) 5, 560
HapII CCGG 3 cut(s) 86, 153, 537
HgaI GACGC 1 cut(s) 397
HhaI GCGC 1 cut(s) 309
Hin1II CATG 1 cut(s) 627
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 1 cut(s) 452
HpaII CCGG 3 cut(s) 86, 153, 537
HphI GGTGA 2 cut(s) 413, 523
Hpy166II GTNNAC 3 cut(s) 361, 433, 531
Hpy188III TCNNGA 3 cut(s) 9, 86, 571
Hpy8I GTNNAC 3 cut(s) 361, 433, 531
HpyAV CCTTC 6 cut(s) 199, 202, 272, 282, 353, 577
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 433, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 479, 611
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 1 cut(s) 627
HspAI GCGC 1 cut(s) 307
Kpn2I TCCGGA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 82, 403
LmnI GCTCC 2 cut(s) 184, 619
Lsp1109I GCAGC 1 cut(s) 306
MaeI CTAG 1 cut(s) 470
MalI GATC 2 cut(s) 84, 405
MboI GATC 2 cut(s) 82, 403
MboII GAAGA 3 cut(s) 22, 39, 133
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 181, 435
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 3 cut(s) 42, 266, 474
MluNI TGGCCA 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 4 cut(s) 16, 167, 192, 386
Mox20I TGGCCA 1 cut(s) 560
MroI TCCGGA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 560
MseI TTAA 1 cut(s) 234
Msp20I TGGCCA 1 cut(s) 560
MspI CCGG 3 cut(s) 86, 153, 537
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 3 cut(s) 215, 479, 611
NdeII GATC 2 cut(s) 82, 403
NlaIII CATG 1 cut(s) 627
NlaIV GGNNCC 1 cut(s) 340
NmeAIII GCCGAG 1 cut(s) 290
PfeI GAWTC 1 cut(s) 452
PflFI GACNNNGTC 1 cut(s) 551
PinAI ACCGGT 1 cut(s) 536
PkrI GCNGC 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 518
PspN4I GGNNCC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 2 cut(s) 82, 403
SduI GDGCHC 2 cut(s) 181, 435
SetI ASST 9 cut(s) 178, 201, 215, 321, 378, 399, 469, 527, 600
SmlI CTYRAG 2 cut(s) 7, 599
SmoI CTYRAG 2 cut(s) 7, 599
Sse9I AATT 3 cut(s) 42, 266, 474
SsiI CCGC 2 cut(s) 113, 305
SspMI CTAG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 127
TasI AATT 3 cut(s) 42, 266, 474
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 551
VneI GTGCAC 1 cut(s) 431
XagI CCTNNNNNAGG 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.