Rh5CG345800

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000346
Physical Location & Seq
Forward (+)
39872027 .. 39872404
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG345800.1

Sequence Viewer

Length: 378 bp
ATGGCAATGGTCGGAGATCCAGACATTCTTAGTGACTTCATAGCACCTCCAAATGGAACAGTAGACGGAAACTTCTTCACATACAATGGCATGCGTGTTCTTGTTGGGGGAGACGAGCCTAAAAACTTCACAGTACTGAAGGCAACCTCAGCAGAGTTCCCTGCTCTTAATGGCCAGAGTGTTTCATATGTCGTCCTTGAATTCCCAGCTGGCACTACTAACCCACCAGATACTCATCCTCGCTTTGCTGAACTCCTCTTCCTTATTGACGGTACCCTTGAAGTTGGCTTTGTCGACATAAAGAACAACCTCTTTACTCAGACTCTTCAGACAAGCGACCTGTTTGTGTTTCCCAAGGGCCTTGTTCACTACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

125

Amino Acids

13.63

Weight (kDa)

4.33

Isoelectric Point (pI)

15.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 39 - 125 7.3e-18 Cupin
Cupin_2 PF07883 65 - 124 2.7e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 2 cut(s) 63, 294
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 158, 311
AfaI GTAC 2 cut(s) 135, 274
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 2 cut(s) 200, 281
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 11
AoxI GGCC 2 cut(s) 172, 358
ApoI RAATTY 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 358
BalI TGGCCA 1 cut(s) 174
BanI GGYRCC 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 105
BmcAI AGTACT 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 162, 332
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 174, 360
BshNI GGYRCC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsnI GGCC 2 cut(s) 174, 360
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 2 cut(s) 174, 360
BspCNI CTCAG 2 cut(s) 161, 331
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 61, 133, 272
Bst6I CTCTTC 2 cut(s) 263, 330
BstC8I GCNNGC 2 cut(s) 92, 211
BstDEI CTNAG 3 cut(s) 29, 148, 318
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 2 cut(s) 174, 360
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 92, 211
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 2 cut(s) 134, 273
CviAII CATG 1 cut(s) 91
CviJI RGCY 5 cut(s) 118, 174, 209, 288, 360
CviKI_1 RGCY 5 cut(s) 118, 174, 209, 288, 360
CviQI GTAC 2 cut(s) 134, 273
DdeI CTNAG 3 cut(s) 29, 148, 318
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 263, 330
EarI CTCTTC 2 cut(s) 263, 330
Eco130I CCWWGG 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 158, 311
EcoO109I RGGNCCY 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 1 cut(s) 94
FaiI YATR 6 cut(s) 41, 82, 92, 187, 189, 299
FatI CATG 1 cut(s) 90
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 2 cut(s) 63, 294
FokI GGATG 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 174, 360
Hin1II CATG 1 cut(s) 94
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 1 cut(s) 322
Hpy166II GTNNAC 3 cut(s) 64, 295, 367
Hpy188I TCNGA 3 cut(s) 14, 321, 330
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 3 cut(s) 64, 295, 367
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 3 cut(s) 61, 133, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 3 cut(s) 29, 148, 318
Hsp92II CATG 1 cut(s) 94
KpnI GGTACC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 33, 174, 188, 195, 219, 240, 353
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 67, 250, 317
MflI RGATCY 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 5 cut(s) 57, 157, 249, 266, 320
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
MseI TTAA 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 358
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 135, 274
RsaNI GTAC 2 cut(s) 134, 273
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 168
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 358
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 1 cut(s) 316
SetI ASST 5 cut(s) 49, 149, 211, 312, 342
SphI GCATGC 1 cut(s) 94
Sse9I AATT 1 cut(s) 200
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 61, 133, 272
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 133
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 28, 174
TspGWI ACGGA 1 cut(s) 81
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 2 cut(s) 63, 294
ZrmI AGTACT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.