Prupe.6G133200_v2.0.a1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000346
Physical Location & Seq
Forward (+)
10472557 .. 10473183
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G133200.1

Sequence Viewer

Length: 627 bp
ATGGCCTCAAGAACTTCCACCCTCAAATTCTTCTCACTACTAATTTCTTCCTTTGCCATTGTTCAAATGGCAATGGCTGGAGACCCGGACATTATTTCTGACTTCCTACTGCCTGCAAATGGTACAGTAGATGCAAACTTCTTCACTTACACCGGCTTTCGTGTTCTTGTTGGAGGCAGCCCTCCAACTGCCTTCAAGGTATTGAAGGCAACCTTGGCTGAGTTCCCTGCTCTTGATGGGCAGAGTGTTTCATATGCTGTCCTCGAATTCCCATCTGGCACTACTAATCCACCACACACTCATCCTCGTTCTGCTGAGCTCCTTTTCCTCATTGATGGTACCCTTGAAGTTGGTTTCATTGATACAAAAAACAACCTTTTTACACAAACTCTTCAAGCAGGTGATTTGTTTGTGTTTCCCAAGGGACTTGTGCACTTCCAGTACAATGCTGATGCACAAAACCCAGCTCTAGCAGTTTCTGCCTTTGGAAGTGCAAATGCAGGCACTGTATCACTCCCCAACACTCTCTTCACCACCGGCATCGATGACAATGTCTTGGCTATCTCCTTCAAGACTGATGTAGCCACCATTCAAAAGCTCAAGGCCGGTCTTGCTCCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

22.04

Weight (kDa)

5.19

Isoelectric Point (pI)

18.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 1 cut(s) 338
AcsI RAATTY 2 cut(s) 26, 266
AfaI GTAC 3 cut(s) 124, 340, 443
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 7 cut(s) 65, 196, 205, 347, 395, 571, 593
AjuI GAANNNNNNNTTGG 4 cut(s) 197, 229, 512, 544
AluBI AGCT 3 cut(s) 319, 467, 598
AluI AGCT 3 cut(s) 319, 467, 598
Alw21I GWGCWC 2 cut(s) 321, 435
Alw26I GTCTC 1 cut(s) 75
Alw44I GTGCAC 1 cut(s) 431
AlwNI CAGNNNCTG 2 cut(s) 479, 506
AoxI GGCC 2 cut(s) 3, 603
ApaLI GTGCAC 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 2 cut(s) 26, 266
Asp718I GGTACC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 413, 523
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 2 cut(s) 321, 435
BbvI GCAGC 1 cut(s) 189
BccI CCATC 3 cut(s) 230, 280, 329
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 1 cut(s) 178
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 3 cut(s) 121, 442, 549
BpmI CTGGAG 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 86
Bsa29I ATCGAT 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 213, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 3 cut(s) 152, 536, 605
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 78
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 213, 420
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 210, 306
BseNI ACTGG 1 cut(s) 439
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 463
BshFI GGCC 2 cut(s) 5, 605
BshNI GGYRCC 1 cut(s) 338
BshVI ATCGAT 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 321, 435
BsiSI CCGG 4 cut(s) 86, 153, 537, 606
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 2 cut(s) 5, 605
Bso31I GGTCTC 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 321, 435
Bsp1720I GCTNAGC 1 cut(s) 315
BspANI GGCC 2 cut(s) 5, 605
BspCNI CTCAG 2 cut(s) 211, 307
BspDI ATCGAT 1 cut(s) 543
BspLI GGNNCC 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 389
BspT107I GGYRCC 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 3 cut(s) 152, 536, 605
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 3 cut(s) 152, 536, 605
BssECI CCNNGG 2 cut(s) 213, 420
BssT1I CCWWGG 2 cut(s) 213, 420
Bst4CI ACNGT 2 cut(s) 127, 508
Bst6I CTCTTC 2 cut(s) 396, 533
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 114, 502
BstDEI CTNAG 2 cut(s) 219, 315
BstF5I GGATG 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 215, 479, 611
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 2 cut(s) 5, 605
BsuTUI ATCGAT 1 cut(s) 543
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 504
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 114, 502
CaiI CAGNNNCTG 2 cut(s) 479, 506
Cfr10I RCCGGY 3 cut(s) 152, 536, 605
ClaI ATCGAT 1 cut(s) 543
Csp6I GTAC 3 cut(s) 123, 339, 442
CviAII CATG 1 cut(s) 624
CviQI GTAC 3 cut(s) 123, 339, 442
DdeI CTNAG 2 cut(s) 219, 315
Eam1104I CTCTTC 2 cut(s) 396, 533
EarI CTCTTC 2 cut(s) 396, 533
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 213, 420
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 266
EcoT14I CCWWGG 2 cut(s) 213, 420
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 2 cut(s) 213, 420
FaeI CATG 1 cut(s) 627
FaiI YATR 3 cut(s) 253, 255, 625
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 438
FatI CATG 1 cut(s) 623
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 288
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 470
GluI GCNGC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 467
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 5, 605
HapII CCGG 4 cut(s) 86, 153, 537, 606
Hin1II CATG 1 cut(s) 627
HpaII CCGG 4 cut(s) 86, 153, 537, 606
HphI GGTGA 2 cut(s) 413, 523
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 3 cut(s) 9, 233, 571
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 199, 202, 577
HpyCH4III ACNGT 2 cut(s) 127, 508
HpyCH4V TGCA 6 cut(s) 116, 134, 433, 455, 494, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 479, 611
HpyF3I CTNAG 2 cut(s) 219, 315
Hsp92II CATG 1 cut(s) 627
KpnI GGTACC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 324, 619
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 3 cut(s) 121, 442, 549
MaeI CTAG 1 cut(s) 470
MboII GAAGA 5 cut(s) 22, 39, 133, 383, 520
MhlI GDGCHC 2 cut(s) 321, 435
MluCI AATT 3 cut(s) 26, 42, 266
MmeI TCCRAC 2 cut(s) 151, 209
MnlI CCTC 7 cut(s) 16, 32, 167, 192, 272, 315, 338
MspI CCGG 4 cut(s) 86, 153, 537, 606
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 215, 479, 611
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 253
NlaIII CATG 1 cut(s) 627
NlaIV GGNNCC 1 cut(s) 340
PaqCI CACCTGC 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 551
PkrI GCNGC 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 340
PstNI CAGNNNCTG 2 cut(s) 479, 506
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 3 cut(s) 124, 340, 443
RsaNI GTAC 3 cut(s) 123, 339, 442
SacI GAGCTC 1 cut(s) 321
SatI GCNGC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 321, 435
SetI ASST 7 cut(s) 201, 215, 321, 378, 403, 469, 600
SfaNI GCATC 3 cut(s) 121, 442, 549
SmlI CTYRAG 2 cut(s) 7, 599
SmoI CTYRAG 2 cut(s) 7, 599
Sse9I AATT 3 cut(s) 26, 42, 266
SspMI CTAG 1 cut(s) 470
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 213, 420
TaaI ACNGT 2 cut(s) 127, 508
TaqI TCGA 2 cut(s) 264, 543
TasI AATT 3 cut(s) 26, 42, 266
TatI WGTACW 1 cut(s) 441
TscAI CASTG 1 cut(s) 511
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 240, 346
TspRI CASTG 1 cut(s) 511
Tth111I GACNNNGTC 1 cut(s) 551
VneI GTGCAC 1 cut(s) 431
XapI RAATTY 2 cut(s) 26, 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.