MD11G1166900.v1.1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000346
Physical Location & Seq
Forward (+)
17675444 .. 17675914
471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1166900.v1.1.491

Sequence Viewer

Length: 471 bp
ATGGCATCCAAAACTTCAAGTTTCAGATTCTTCTCACTAATAATTTTTTCATTTGCCATTATCCAAATGGCAATAGCTGGAGATCCGAACATTATTACTGACTTCATAGTGCCTTCAAATGCAAATGGAATTGTAGATGGAAACTTCTTTACATACACCGGCTTTCATGCCCTTGTTGAAGGAGACCCTTCCACAGCCTTCAAGGCTATGAAGGCATCCTTGGCTAAATTCCCTACTCTTAATGGGCAAAGTGTTCGTATGCCGCCCTTCAGTTTCCAAATGGCATTACCAACCCACCACACACTCATCTTTGCTCTGCCGAGCTACTTTTCCTCGATGGTGGTACCCTTGAAGTTGGTTTCGTTGACACCAAAAACAACCTCTTTACGCAGACGCTTCAGACACGTGATCTGTTTGTGTTTCCCAAGGGACTTGCGCACTTCCAGTACAATGCTGATGCAGAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

10.29

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 437
Acc65I GGTACC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 343
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 2 cut(s) 253, 382
AcvI CACGTG 1 cut(s) 406
AfaI GTAC 2 cut(s) 345, 448
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 5 cut(s) 18, 117, 179, 202, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 2 cut(s) 77, 324
AluI AGCT 2 cut(s) 77, 324
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 227
Asp718I GGTACC 1 cut(s) 343
AspLEI GCGC 1 cut(s) 438
BanI GGYRCC 1 cut(s) 343
BbrPI CACGTG 1 cut(s) 406
BccI CCATC 2 cut(s) 131, 331
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BcoDI GTCTC 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 345
BmsI GCATC 3 cut(s) 14, 224, 447
BpmI CTGGAG 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 219, 425
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 219, 425
BseGI GGATG 2 cut(s) 5, 215
BseNI ACTGG 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 343
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 82, 408
BspACI CCGC 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 219, 425
BssMI GATC 2 cut(s) 82, 408
BssT1I CCWWGG 2 cut(s) 219, 425
BstBAI YACGTR 1 cut(s) 406
BstF5I GGATG 2 cut(s) 5, 215
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 2 cut(s) 85, 411
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 2 cut(s) 82, 408
BstMWI GCNNNNNNNGC 3 cut(s) 203, 212, 221
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BtsCI GGATG 2 cut(s) 5, 215
CfoI GCGC 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 158
CseI GACGC 1 cut(s) 402
Csp6I GTAC 2 cut(s) 344, 447
CviAII CATG 1 cut(s) 167
CviJI RGCY 6 cut(s) 77, 162, 197, 206, 224, 324
CviKI_1 RGCY 6 cut(s) 77, 162, 197, 206, 224, 324
CviQI GTAC 2 cut(s) 344, 447
DpnI GATC 2 cut(s) 84, 410
DpnII GATC 2 cut(s) 82, 408
Eco130I CCWWGG 2 cut(s) 219, 425
Eco31I GGTCTC 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 253, 382
Eco72I CACGTG 1 cut(s) 406
EcoT14I CCWWGG 2 cut(s) 219, 425
ErhI CCWWGG 2 cut(s) 219, 425
FaeI CATG 1 cut(s) 170
FaiI YATR 5 cut(s) 107, 154, 168, 209, 260
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 443
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 263
FspI TGCGCA 1 cut(s) 437
GlaI GCGC 1 cut(s) 437
GluI GCNGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 402
HhaI GCGC 1 cut(s) 438
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HinfI GANTC 1 cut(s) 27
HpaII CCGG 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 26, 87, 401
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 6 cut(s) 123, 173, 198, 205, 208, 277
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 2 cut(s) 122, 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 212, 221
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 436
KpnI GGTACC 1 cut(s) 347
Kzo9I GATC 2 cut(s) 82, 408
LpnPI CCDG 3 cut(s) 63, 172, 457
LweI GCATC 3 cut(s) 14, 224, 447
MaeII ACGT 1 cut(s) 405
MalI GATC 2 cut(s) 84, 410
MboI GATC 2 cut(s) 82, 408
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 82
MluCI AATT 3 cut(s) 42, 129, 227
MnlI CCTC 2 cut(s) 343, 391
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 203, 212, 221
NdeII GATC 2 cut(s) 82, 408
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 345
NmeAIII GCCGAG 1 cut(s) 345
NsbI TGCGCA 1 cut(s) 437
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 264
PmaCI CACGTG 1 cut(s) 406
PmlI CACGTG 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 406
PspCI CACGTG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 345
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 2 cut(s) 345, 448
RsaNI GTAC 2 cut(s) 344, 447
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 2 cut(s) 82, 408
SetI ASST 5 cut(s) 79, 326, 383, 408, 470
SfaNI GCATC 3 cut(s) 14, 224, 447
Sse9I AATT 3 cut(s) 42, 129, 227
SsiI CCGC 1 cut(s) 263
StyI CCWWGG 2 cut(s) 219, 425
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 335
TasI AATT 3 cut(s) 42, 129, 227
TatI WGTACW 1 cut(s) 446
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TspDTI ATGAA 4 cut(s) 39, 94, 155, 224
XapI RAATTY 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.