Rmu_sc0004673.1_g000002

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004673.1
OG0000346
Physical Location & Seq
Reverse (-)
3974 .. 4249
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004673.1_g000002.1.cds

Sequence Viewer

Length: 276 bp
atggccttgagatattttgcagtactgacatcagtacctgccctggccactacttgtaaaagggccgtagcggatcctgacatcctttccgactttatagtgccgcaaaatactacgaaagttgatggaacatttttcacttgcactaaattccgtggactatttgatggagttgctgaaacctttaaggtaacaaaatctgccttgactgagttccctgctcttgacggcaaagtgtgtcatatgcggtgcttcaatttccagcaaatggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

91

Amino Acids

10.12

Weight (kDa)

7.66

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 268
AciI CCGC 3 cut(s) 71, 104, 247
AclWI GGATC 2 cut(s) 68, 81
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 2 cut(s) 24, 36
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 1 cut(s) 42
AlwI GGATC 2 cut(s) 68, 81
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 3 cut(s) 3, 45, 63
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 63
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BalI TGGCCA 1 cut(s) 47
BamHI GGATCC 1 cut(s) 73
BccI CCATC 2 cut(s) 119, 161
BceAI ACGGC 2 cut(s) 50, 244
BciT130I CCWGG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 42, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 42, 154
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 201
BshFI GGCC 3 cut(s) 5, 47, 65
BslI CCNNNNNNNGG 1 cut(s) 268
BsnI GGCC 3 cut(s) 5, 47, 65
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 3 cut(s) 71, 104, 247
BspANI GGCC 3 cut(s) 5, 47, 65
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 2 cut(s) 68, 81
BssECI CCNNGG 2 cut(s) 42, 154
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 3 cut(s) 5, 47, 65
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 23, 35
CviJI RGCY 3 cut(s) 5, 47, 65
CviKI_1 RGCY 3 cut(s) 5, 47, 65
CviQI GTAC 2 cut(s) 23, 35
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 42
FaiI YATR 3 cut(s) 98, 243, 245
FauNDI CATATG 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 3 cut(s) 5, 47, 65
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 77, 224
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 20, 144
HpyF3I CTNAG 1 cut(s) 210
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 29, 51, 56, 90, 231
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 149, 256
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 114
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 243
NdeII GATC 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 75
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 24, 36
RsaNI GTAC 2 cut(s) 23, 35
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 63
ScaI AGTACT 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 44
SetI ASST 3 cut(s) 40, 185, 192
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 2 cut(s) 149, 256
SsiI CCGC 3 cut(s) 71, 104, 247
StyD4I CCNGG 1 cut(s) 42
TasI AATT 2 cut(s) 149, 256
TatI WGTACW 1 cut(s) 22
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 268
XapI RAATTY 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.