Prupe.6G133000_v2.0.a1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000346
Physical Location & Seq
Forward (+)
10462717 .. 10463346
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G133000.1

Sequence Viewer

Length: 630 bp
ATGGCCTCAAGGACTTCATCCCTTAAATTCTTTTCACTACTAATCTGTTCGATTGCCATTGTTCAGATGGCGACCGCTGGAGACCCGGACATTATTACTGACTTCATTGCTCCTTCAAATGGAACAGTAGATGGAAACTTCTTCACATACACTGGCTTTCGTGTTCTTGTTGGAGGAGGCCCTCCTCCCACAGCTTTCAATGTATTGAAGGCAACCTTGGCTGAGTTCCCTTCTCTTAATGGGCAAAGTGTTTCTTATGCCGTCCTTCAATTCCCATCCGGCACTACTAACCCACCGCACACTCATCCTCGCTCTGCTGAGCTCCTTTTCCTTCTTGGTGGTACGCTTGAAGTCGGTTTTGTTGACACAAAAAACAACCTCTTTACCCAGACTCTGCAAGCAGGTGATCTGTTTGTGTTTCCTAAGGGACTTGCCCATTTCCAGTACAATGCTGATTCACAAAACCCAGCTCTAGCAATTTCAGCCTTTGGAAGTGCAAATGCAGGAACAGTATCAATCCCCAGCACTTTGTTCGCCACTGGCATTGACGACAATGTCTTGGCTATCTCCTTCAAGACTGATGTAGCCACCATTCAAAAGCTCAAGGCTGGTCTGGCTGCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

210

Amino Acids

21.86

Weight (kDa)

5.82

Isoelectric Point (pI)

18.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
AasI GACNNNNNNGTC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 392
AciI CCGC 2 cut(s) 75, 296
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 2 cut(s) 343, 446
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 7 cut(s) 117, 199, 208, 269, 350, 574, 596
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 4 cut(s) 194, 322, 470, 601
AluI AGCT 4 cut(s) 194, 322, 470, 601
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 394
AoxI GGCC 2 cut(s) 3, 178
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 416
AxyI CCTNAGG 1 cut(s) 423
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 604
BccI CCATC 3 cut(s) 61, 125, 283
BceAI ACGGC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 514, 548
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 1 cut(s) 618
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 619
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 157, 442, 544
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 3 cut(s) 17, 275, 304
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 213, 309
BseNI ACTGG 3 cut(s) 157, 442, 544
BseRI GAGGAG 2 cut(s) 174, 189
BseXI GCAGC 1 cut(s) 604
BseYI CCCAGC 2 cut(s) 466, 521
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 5, 180
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 86, 279
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 2 cut(s) 5, 180
Bso31I GGTCTC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 2 cut(s) 75, 296
BspANI GGCC 2 cut(s) 5, 180
BspCNI CTCAG 2 cut(s) 214, 310
BspMI ACCTGC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 3 cut(s) 157, 442, 544
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 127, 511
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 222, 318, 423
BstF5I GGATG 3 cut(s) 17, 275, 304
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 406
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 218, 482, 614
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 604
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 2 cut(s) 5, 180
BtsCI GGATG 3 cut(s) 17, 275, 304
BtsIMutI CAGTG 2 cut(s) 150, 537
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 342, 445
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 1 cut(s) 627
CviQI GTAC 2 cut(s) 342, 445
DdeI CTNAG 3 cut(s) 222, 318, 423
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 322
Eco81I CCTNAGG 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 630
FaiI YATR 3 cut(s) 148, 258, 628
FalI AAGNNNNNCTT 4 cut(s) 200, 232, 238, 270
FaqI GGGAC 1 cut(s) 441
FatI CATG 1 cut(s) 626
Fnu4HI GCNGC 1 cut(s) 618
FokI GGATG 3 cut(s) 4, 262, 291
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 1 cut(s) 473
GluI GCNGC 1 cut(s) 618
GsaI CCCAGC 2 cut(s) 470, 525
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 5, 180
HapII CCGG 2 cut(s) 86, 279
Hin1II CATG 1 cut(s) 630
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 2 cut(s) 391, 455
HpaII CCGG 2 cut(s) 86, 279
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 574
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 6 cut(s) 123, 202, 240, 275, 341, 580
HpyCH4III ACNGT 2 cut(s) 127, 511
HpyCH4V TGCA 3 cut(s) 397, 497, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 482, 614
HpyF3I CTNAG 3 cut(s) 222, 318, 423
Hsp92II CATG 1 cut(s) 630
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 115, 327
Lsp1109I GCAGC 1 cut(s) 604
MaeI CTAG 1 cut(s) 473
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 3 cut(s) 26, 269, 477
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 7 cut(s) 16, 167, 170, 192, 195, 318, 389
MseI TTAA 2 cut(s) 24, 237
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 86, 279
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 218, 482, 614
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 406
NlaIII CATG 1 cut(s) 630
PaqCI CACCTGC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 1 cut(s) 619
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 2 cut(s) 466, 521
PspPI GGNCC 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 2 cut(s) 343, 446
RsaNI GTAC 2 cut(s) 342, 445
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 24, 237
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 324
SetI ASST 7 cut(s) 196, 218, 324, 381, 406, 472, 603
SmlI CTYRAG 2 cut(s) 7, 602
SmoI CTYRAG 2 cut(s) 7, 602
Sse9I AATT 3 cut(s) 26, 269, 477
SsiI CCGC 2 cut(s) 75, 296
SspMI CTAG 1 cut(s) 473
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 127, 511
TaqI TCGA 1 cut(s) 50
TasI AATT 3 cut(s) 26, 269, 477
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 2 cut(s) 24, 237
Tru9I TTAA 2 cut(s) 24, 237
TscAI CASTG 2 cut(s) 157, 544
TseI GCWGC 1 cut(s) 617
TspDTI ATGAA 2 cut(s) 6, 94
TspRI CASTG 2 cut(s) 157, 544
Tth111I GACNNNGTC 1 cut(s) 554
XapI RAATTY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.