RLG00000034446

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000346
Physical Location & Seq
Forward (+)
42821053 .. 42821918
866 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034446

Sequence Viewer

Length: 630 bp
ATGGCCTCGAGAACTTCCACTCTCAAATTATTCTCACTACTAATAATCTGTTTTCTTGCCATCGCCAAAATGGCAATGGCCGGAGATCCAGACATTCTTAGTGACTTCATAGCACCTCCAAATGGAACAGTAGACGGAAACTTCTTCACATACACTGGCATGCGTGTTCTTGTTGGAGGAGACGAGCCCAAAAACTTCACAGTACTGAAGGCAACCTCGGCAGAGTTCCCTGCTCTTAATGGCCAGAGTGTTTCATATGCCGTCCTTGAATTCCCAGCTGGCACTACTAACCCACCACACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTATTGACGGTACCCTTGAAGTTGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAGACTCTTCAGACAGGCGACCTGTTTGTGTTTCCCAAGGGCCTTGTTCACTACCAGTACAATGCCGATTCACAAAACTCGGCTCTGGCAATTTCTGCCTTTGGAAGTGCTAGTGCAGGAACTGTGTCAATTCCCGCCACTTTGTTCACCACCAACATTGATGACGATGTCTTGGCTTTGTCCTTTAAGACTGATGTATCTACCATTCAAAAGCTTAAGGCCGGTCTCGCTCCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

210

Amino Acids

22.2

Weight (kDa)

5.03

Isoelectric Point (pI)

21.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 62 - 198 2.1e-32 Cupin
Cupin_2 PF07883 88 - 156 1.5e-12 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AccI GTMKAC 2 cut(s) 132, 363
AciI CCGC 1 cut(s) 522
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 2 cut(s) 78, 241
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 2 cut(s) 227, 380
AfaI GTAC 3 cut(s) 204, 343, 446
AfiI CCNNNNNNNGG 1 cut(s) 122
AflII CTTAAG 1 cut(s) 602
AgsI TTSAA 3 cut(s) 269, 350, 596
AluBI AGCT 3 cut(s) 278, 322, 601
AluI AGCT 3 cut(s) 278, 322, 601
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 174, 617
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 5 cut(s) 3, 78, 241, 427, 606
ApoI RAATTY 1 cut(s) 269
Asp718I GGTACC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 1 cut(s) 7
BaeI ACNNNNGTAYC 2 cut(s) 567, 600
BalI TGGCCA 1 cut(s) 243
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 2 cut(s) 189, 324
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 174, 617
BfaI CTAG 1 cut(s) 498
BfrI CTTAAG 1 cut(s) 602
BglI GCCNNNNNGGC 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 318
BmcAI AGTACT 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 343
Bpu1102I GCTNAGC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 2 cut(s) 216, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 608
Bse1I ACTGG 2 cut(s) 160, 442
Bse3DI GCAATG 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 216, 423
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 309, 401
BseNI ACTGG 2 cut(s) 160, 442
BseRI GAGGAG 2 cut(s) 192, 314
BseYI CCCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 5 cut(s) 5, 80, 243, 429, 608
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 2 cut(s) 81, 609
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 174, 617
BsmBI CGTCTC 1 cut(s) 174
BsnI GGCC 5 cut(s) 5, 80, 243, 429, 608
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 189, 324
Bsp143I GATC 1 cut(s) 85
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 1 cut(s) 522
BspANI GGCC 5 cut(s) 5, 80, 243, 429, 608
BspCNI CTCAG 2 cut(s) 310, 400
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 608
BsrI ACTGG 2 cut(s) 160, 442
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 2 cut(s) 216, 423
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 4 cut(s) 130, 202, 341, 511
Bst6I CTCTTC 2 cut(s) 332, 399
BstAFI CTTAAG 1 cut(s) 602
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 161, 280
BstDEI CTNAG 3 cut(s) 98, 318, 387
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 174, 617
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 71, 218, 482, 614
BstNSI RCATGY 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 5 cut(s) 5, 80, 243, 429, 608
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 161, 280
CaiI CAGNNNCTG 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 608
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 3 cut(s) 203, 342, 445
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 2 cut(s) 160, 627
CviQI GTAC 3 cut(s) 203, 342, 445
DdeI CTNAG 3 cut(s) 98, 318, 387
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
EaeI YGGCCR 2 cut(s) 78, 241
Eam1104I CTCTTC 2 cut(s) 332, 399
EarI CTCTTC 2 cut(s) 332, 399
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 2 cut(s) 189, 324
Eco31I GGTCTC 1 cut(s) 617
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 227, 380
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 189, 324
ErhI CCWWGG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 2 cut(s) 163, 630
FaiI YATR 6 cut(s) 110, 151, 161, 256, 258, 628
FatI CATG 2 cut(s) 159, 626
FauI CCCGC 1 cut(s) 529
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 2 cut(s) 132, 363
FokI GGATG 1 cut(s) 291
FriOI GRGCYC 2 cut(s) 189, 324
FspBI CTAG 1 cut(s) 498
GsaI CCCAGC 1 cut(s) 278
HaeIII GGCC 5 cut(s) 5, 80, 243, 429, 608
HapII CCGG 2 cut(s) 81, 609
Hin1II CATG 2 cut(s) 163, 630
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 2 cut(s) 391, 455
HpaII CCGG 2 cut(s) 81, 609
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 4 cut(s) 133, 364, 436, 534
Hpy188I TCNGA 2 cut(s) 390, 399
Hpy188III TCNNGA 2 cut(s) 9, 89
Hpy8I GTNNAC 4 cut(s) 133, 364, 436, 534
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 4 cut(s) 130, 202, 341, 511
HpyCH4V TGCA 1 cut(s) 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 218, 482, 614
HpyF3I CTNAG 3 cut(s) 98, 318, 387
Hsp92II CATG 2 cut(s) 163, 630
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 327, 622
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 136, 319, 386
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 189, 324
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 4 cut(s) 26, 269, 477, 516
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 7 cut(s) 16, 126, 170, 226, 318, 335, 389
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 3 cut(s) 237, 573, 603
MslI CAYNNNNRTG 1 cut(s) 158
Msp20I TGGCCA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 2 cut(s) 81, 609
MwoI GCNNNNNNNGC 4 cut(s) 71, 218, 482, 614
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 163, 630
NlaIV GGNNCC 1 cut(s) 343
NmeAIII GCCGAG 2 cut(s) 197, 446
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 163
PaeI GCATGC 1 cut(s) 163
PaeR7I CTCGAG 1 cut(s) 7
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 1 cut(s) 554
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 3 cut(s) 204, 343, 446
RsaNI GTAC 3 cut(s) 203, 342, 445
RseI CAYNNNNRTG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 3 cut(s) 237, 573, 603
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 427
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 1 cut(s) 385
SduI GDGCHC 2 cut(s) 189, 324
SetI ASST 7 cut(s) 118, 218, 280, 324, 381, 411, 603
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 7, 602
SmoI CTYRAG 2 cut(s) 7, 602
SphI GCATGC 1 cut(s) 163
Sse9I AATT 4 cut(s) 26, 269, 477, 516
SsiI CCGC 1 cut(s) 522
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 324
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 4 cut(s) 130, 202, 341, 511
TaqI TCGA 2 cut(s) 8, 363
TasI AATT 4 cut(s) 26, 269, 477, 516
TatI WGTACW 2 cut(s) 202, 444
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 3 cut(s) 237, 573, 603
Tru9I TTAA 3 cut(s) 237, 573, 603
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 97, 243
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 554
Vha464I CTTAAG 1 cut(s) 602
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 2 cut(s) 67, 73
XhoI CTCGAG 1 cut(s) 7
XmiI GTMKAC 2 cut(s) 132, 363
XspI CTAG 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.