Prupe.6G133100_v2.0.a1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000346
Physical Location & Seq
Forward (+)
10464917 .. 10465546
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G133100.1

Sequence Viewer

Length: 630 bp
ATGGCCTCAAGAACTTCCACCCTCAAATTCTTCTCACTACTAATCTGTTCGATTGCCATTGTTCAGATGGCGACCGCTGGAGACCCGGACATAATTACTGACTTCATTGCTCCTCCAAATGGAACAGTAGATGGAAACTTCTTCACATACACTGGCTTTCGTGTTCTTGTTGGAGGAGGCCCTCCTTCCACAGCTTTCAAGGTATTGAAGGCAACCTTGGCTGAGTTCCCTTCTCTTAATGGGCAAAGTGTTTCTTATGCCGTCCTTCAATTCCCATCCGGCACTACTAACCCACCGCACACTCATCCTCGCTCTGCTGAGCTCCTTTTCCTTGTTGCTGGTACGCTTGAAGTCGGTTTTGTTGACACAAAAAACAACCTCTTTACCCAGACTCTGCAAGCAGGTGATCTGTTTGTGTTTCCTAAGGGACTTGCCCACTTCCAGTTCAATGCTGATTCACAAAACCCAGCTCTAGCAATTTCAGCCTTTGGAAGTGCAAATGCAGGAACAGTATCAATCCCCAGCACTTTGTTCGCCACCGGCATTGACGACAATGTCTTGGCTATCTCCTTCAAGACTGATGTAGCCACCATTCAAAAGCTCAAGGCTGGTCTTGCTGCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

210

Amino Acids

21.88

Weight (kDa)

6.25

Isoelectric Point (pI)

16.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
AasI GACNNNNNNGTC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 392
AciI CCGC 2 cut(s) 75, 296
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 7 cut(s) 199, 208, 269, 350, 448, 574, 596
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 4 cut(s) 194, 322, 470, 601
AluI AGCT 4 cut(s) 194, 322, 470, 601
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 394
AoxI GGCC 2 cut(s) 3, 178
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 416
AxyI CCTNAGG 1 cut(s) 423
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 604
BccI CCATC 3 cut(s) 61, 125, 283
BceAI ACGGC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 514, 548
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 1 cut(s) 618
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 619
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 539
Bse1I ACTGG 2 cut(s) 157, 442
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 275, 304
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 213, 309
BseNI ACTGG 2 cut(s) 157, 442
BseRI GAGGAG 2 cut(s) 102, 189
BseXI GCAGC 1 cut(s) 604
BseYI CCCAGC 2 cut(s) 466, 521
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 5, 180
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 3 cut(s) 86, 279, 540
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 2 cut(s) 5, 180
Bso31I GGTCTC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 2 cut(s) 75, 296
BspANI GGCC 2 cut(s) 5, 180
BspCNI CTCAG 2 cut(s) 214, 310
BspMI ACCTGC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 539
BsrI ACTGG 2 cut(s) 157, 442
BssAI RCCGGY 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 127, 511
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 222, 318, 423
BstF5I GGATG 2 cut(s) 275, 304
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 406
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 218, 482, 614
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 604
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 2 cut(s) 5, 180
BtsCI GGATG 2 cut(s) 275, 304
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 539
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 342
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 1 cut(s) 627
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 3 cut(s) 222, 318, 423
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 322
Eco81I CCTNAGG 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 630
FaiI YATR 4 cut(s) 92, 148, 258, 628
FalI AAGNNNNNCTT 4 cut(s) 200, 232, 238, 270
FaqI GGGAC 1 cut(s) 441
FatI CATG 1 cut(s) 626
Fnu4HI GCNGC 1 cut(s) 618
FokI GGATG 2 cut(s) 262, 291
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 1 cut(s) 473
GluI GCNGC 1 cut(s) 618
GsaI CCCAGC 2 cut(s) 470, 525
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 5, 180
HapII CCGG 3 cut(s) 86, 279, 540
Hin1II CATG 1 cut(s) 630
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 2 cut(s) 391, 455
HpaII CCGG 3 cut(s) 86, 279, 540
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 9, 574
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 5 cut(s) 195, 202, 240, 275, 580
HpyCH4III ACNGT 2 cut(s) 127, 511
HpyCH4V TGCA 3 cut(s) 397, 497, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 482, 614
HpyF3I CTNAG 3 cut(s) 222, 318, 423
Hsp92II CATG 1 cut(s) 630
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 115, 327
Lsp1109I GCAGC 1 cut(s) 604
MaeI CTAG 1 cut(s) 473
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 2 cut(s) 22, 133
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 4 cut(s) 26, 93, 269, 477
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 8 cut(s) 16, 32, 123, 167, 170, 192, 318, 389
MseI TTAA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 3 cut(s) 86, 279, 540
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 218, 482, 614
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 406
NlaIII CATG 1 cut(s) 630
PaqCI CACCTGC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 1 cut(s) 619
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 2 cut(s) 466, 521
PspPI GGNCC 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 324
SetI ASST 8 cut(s) 196, 204, 218, 324, 381, 406, 472, 603
SmlI CTYRAG 2 cut(s) 7, 602
SmoI CTYRAG 2 cut(s) 7, 602
Sse9I AATT 4 cut(s) 26, 93, 269, 477
SsiI CCGC 2 cut(s) 75, 296
SspMI CTAG 1 cut(s) 473
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 127, 511
TaqI TCGA 1 cut(s) 50
TasI AATT 4 cut(s) 26, 93, 269, 477
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 617
TspDTI ATGAA 1 cut(s) 94
TspRI CASTG 1 cut(s) 157
Tth111I GACNNNGTC 1 cut(s) 554
XapI RAATTY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.