RLG00000034440

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000346
Physical Location & Seq
Forward (+)
42769918 .. 42770544
627 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034440

Sequence Viewer

Length: 627 bp
ATGGCTTCAAGAACTTCCAGCCTCAAATACTTCTCGCTACTAATTTTTGCACTCGCCATTGTTCAAATGACATTGGCAGGAGATCCAGACATTCTTAGTGACTTTATTGCGCCTCCAAATGGAACAGTAGATGGAAACTTCTTCACATACACAGGCATGCGTGTTCTTGTTGGAGGAGACGAGCCCAAAACCTTCACAGTACTGAAGGCAACCTTGGCTGAGTTCCCTGCTCTTAACGGGCAGAGTGTTTCATATGCCGTCCTTGAATTCCCAGCTGGCACTACTAACCCACCACACACTCACCCTCGGTCTGCTGAGCTCCTCTTCCTTGTTGACGGAAGCCTTGAAGTTGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAGACTCTTCAGGCAGGTGACCTGTTTGTTTTTCCCAAGGGACTTGTGCACTTCCAGTATAATGCTGACTCAGAAAACCCTGCTATAGCAATTTCTGCCTTTGGAAGTGCAAATGCAGGAACTGTGTCAATTCCTACCACTTTGTTTGCCACCAACATCGATGACAATGTCCTGGCTTTATCCTTCAAGACTGATGTAGCCACTATTCAAAAGCTCAAAGCCGGTCTTGCTCCGAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

22.09

Weight (kDa)

4.88

Isoelectric Point (pI)

18.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 63 - 197 2e-32 Cupin
Cupin_2 PF07883 87 - 160 1.4e-12 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 360
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 2 cut(s) 224, 377
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 6 cut(s) 9, 65, 266, 347, 571, 593
AjnI CCWGG 1 cut(s) 555
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 3 cut(s) 275, 319, 598
AluI AGCT 3 cut(s) 275, 319, 598
Alw21I GWGCWC 2 cut(s) 321, 435
Alw26I GTCTC 1 cut(s) 171
Alw44I GTGCAC 1 cut(s) 431
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 506
ApaLI GTGCAC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 293, 413
BaeGI GKGCMC 1 cut(s) 435
BanII GRGCYC 2 cut(s) 186, 321
Bbv12I GWGCWC 2 cut(s) 321, 435
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 389
BlpI GCTNAGC 1 cut(s) 315
BmcAI AGTACT 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 557
BmrFI CCNGG 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 315
Bsa29I ATCGAT 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 213, 305, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 557
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 213, 305, 420
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 4 cut(s) 210, 306, 398, 468
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 2 cut(s) 189, 311
BseSI GKGCMC 1 cut(s) 435
BseYI CCCAGC 1 cut(s) 271
BshVI ATCGAT 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 321, 435
BsiSI CCGG 1 cut(s) 606
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 438
Bsp1286I GDGCHC 3 cut(s) 186, 321, 435
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 315
BspCNI CTCAG 4 cut(s) 211, 307, 397, 467
BspDI ATCGAT 1 cut(s) 543
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 213, 305, 420
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 213, 420
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 3 cut(s) 127, 199, 508
Bst6I CTCTTC 2 cut(s) 329, 396
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 158, 277
BstDEI CTNAG 5 cut(s) 95, 219, 315, 384, 454
BstEII GGTNACC 1 cut(s) 401
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 215, 479, 611
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 1 cut(s) 160
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 543
BsuTUI ATCGAT 1 cut(s) 543
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 158, 277
CaiI CAGNNNCTG 1 cut(s) 506
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 605
ClaI ATCGAT 1 cut(s) 543
Csp6I GTAC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 2 cut(s) 157, 624
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 5 cut(s) 95, 219, 315, 384, 454
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 329, 396
EarI CTCTTC 2 cut(s) 329, 396
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 213, 420
Eco24I GRGCYC 2 cut(s) 186, 321
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 224, 377
Eco91I GGTNACC 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 319
EcoO65I GGTNACC 1 cut(s) 401
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 555
EcoT14I CCWWGG 2 cut(s) 213, 420
EcoT38I GRGCYC 2 cut(s) 186, 321
ErhI CCWWGG 2 cut(s) 213, 420
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 2 cut(s) 160, 627
FaiI YATR 7 cut(s) 148, 158, 253, 255, 444, 470, 625
FalI AAGNNNNNCTT 4 cut(s) 197, 229, 594, 626
FaqI GGGAC 1 cut(s) 438
FatI CATG 2 cut(s) 156, 623
FauNDI CATATG 1 cut(s) 253
FblI GTMKAC 1 cut(s) 360
FriOI GRGCYC 2 cut(s) 186, 321
GlaI GCGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 275
HapII CCGG 1 cut(s) 606
HhaI GCGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 160, 627
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 2 cut(s) 334, 361
HindII GTYRAC 2 cut(s) 334, 361
HinfI GANTC 2 cut(s) 388, 452
HpaII CCGG 1 cut(s) 606
HphI GGTGA 2 cut(s) 293, 413
Hpy166II GTNNAC 3 cut(s) 334, 361, 433
Hpy188I TCNGA 3 cut(s) 387, 457, 618
Hpy188III TCNNGA 3 cut(s) 9, 86, 571
Hpy8I GTNNAC 3 cut(s) 334, 361, 433
HpyAV CCTTC 3 cut(s) 199, 202, 577
HpyCH4III ACNGT 3 cut(s) 127, 199, 508
HpyCH4V TGCA 4 cut(s) 50, 433, 494, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 479, 611
HpyF3I CTNAG 5 cut(s) 95, 219, 315, 384, 454
Hsp92II CATG 2 cut(s) 160, 627
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 324, 619
MaeIII GTNAC 2 cut(s) 98, 401
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 133, 316, 383
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 186, 321, 435
MluCI AATT 4 cut(s) 42, 266, 474, 513
MlyI GAGTC 2 cut(s) 382, 446
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 6 cut(s) 32, 123, 167, 315, 332, 386
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 215, 479, 611
NdeI CATATG 1 cut(s) 253
NdeII GATC 1 cut(s) 82
NlaIII CATG 2 cut(s) 160, 627
NmuCI GTSAC 2 cut(s) 98, 401
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 551
PleI GAGTC 2 cut(s) 382, 446
PpsI GAGTC 2 cut(s) 382, 446
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 555
PspEI GGTNACC 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 1 cut(s) 555
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 359
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 201
SchI GAGTC 2 cut(s) 382, 446
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 3 cut(s) 186, 321, 435
SetI ASST 8 cut(s) 194, 215, 277, 321, 378, 403, 408, 600
SfcI CTRYAG 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 155
SphI GCATGC 1 cut(s) 160
Sse9I AATT 4 cut(s) 42, 266, 474, 513
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 555
StyI CCWWGG 2 cut(s) 213, 420
TaaI ACNGT 3 cut(s) 127, 199, 508
TaqI TCGA 2 cut(s) 360, 543
TaqII GACCGA 1 cut(s) 297
TasI AATT 4 cut(s) 42, 266, 474, 513
TatI WGTACW 1 cut(s) 199
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 2 cut(s) 98, 401
Tsp45I GTSAC 2 cut(s) 98, 401
TspDTI ATGAA 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 351
Tth111I GACNNNGTC 1 cut(s) 551
VneI GTGCAC 1 cut(s) 431
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 360
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.