MD11G1169200.v1.1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000346
Physical Location & Seq
Reverse (-)
18134996 .. 18135634
639 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1169200.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGCCTCCAGAACTTCCAGCCTCAGATTCCTCTTACTATTAATTTTTTCATTTGCCATTGTTCAAATGGCAATGGCCGGAGACCCGGACATTATTACTGACTTCATAGTGCCTCCAAATGAAAATGGAACATTAGATGGAAACTTCTTTACATACACTGGCTTTCGTGCCCTTGTTGGAGCCGATCCTCCCACAGCCTTCAAGGTTATGAAGGCATCCTTGGCTGAATTCCCTGCTCTTAATGGGCAGAGTGTTTCGTATGCCGTCCTTCAGTTCCCAAATGGCACTACCAACCCACCACACACTCATCCTCGCTCTGCTGAGCTATTTTTCCTCATTGGCGGTACCCTTGAAGTCGGTTTCGTTGACACCAAAAACAACCTCTTTACGCAGACGCTTCAGACAGGTGATCTGTTTGTGTTTCCCAAGGGACTTGCACACTTCCAGTACAACGCTGATGCAGAAAACCCAGCCATAGCAATTTCTGCATTTGGAAGTGCAAATGCAGGAACTGTATCAATCCCCTCCACCTTGTTCACCACCGGCATCGACGACAATGTGTTGGCTATCTCCTTCAAGACTGATGTTGGCACCATTCAGAAGCTCAAGGCCGGTCTTGCTCCCAAGCCGTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

213

Amino Acids

22.6

Weight (kDa)

5.51

Isoelectric Point (pI)

15.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 66 - 196 5.1e-31 Cupin
Cupin_2 PF07883 90 - 162 1.2e-11 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 2 cut(s) 344, 590
AciI CCGC 1 cut(s) 342
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 2 cut(s) 254, 383
AfaI GTAC 2 cut(s) 346, 449
AgsI TTSAA 4 cut(s) 65, 202, 353, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 2 cut(s) 325, 604
AluI AGCT 2 cut(s) 325, 604
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 3 cut(s) 3, 75, 609
ApoI RAATTY 1 cut(s) 227
AseI ATTAAT 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 419, 529
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 2 cut(s) 344, 590
BccI CCATC 1 cut(s) 131
BceAI ACGGC 2 cut(s) 248, 613
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 181, 346, 592
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 3 cut(s) 224, 448, 555
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 219, 426
Bse118I RCCGGY 2 cut(s) 542, 611
Bse1I ACTGG 2 cut(s) 163, 445
Bse3DI GCAATG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 219, 426
BseGI GGATG 2 cut(s) 215, 307
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 37, 312
BseNI ACTGG 2 cut(s) 163, 445
BseSI GKGCMC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 469
BshFI GGCC 3 cut(s) 5, 77, 611
BshNI GGYRCC 2 cut(s) 344, 590
BsiSI CCGG 4 cut(s) 78, 86, 543, 612
BslFI GGGAC 1 cut(s) 444
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 3 cut(s) 5, 77, 611
Bso31I GGTCTC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 184, 409
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 342
BspANI GGCC 3 cut(s) 5, 77, 611
BspCNI CTCAG 2 cut(s) 36, 313
BspLI GGNNCC 3 cut(s) 181, 346, 592
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 2 cut(s) 344, 590
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 2 cut(s) 542, 611
BsrI ACTGG 2 cut(s) 163, 445
BssAI RCCGGY 2 cut(s) 542, 611
BssECI CCNNGG 2 cut(s) 219, 426
BssMI GATC 2 cut(s) 184, 409
BssT1I CCWWGG 2 cut(s) 219, 426
Bst4CI ACNGT 1 cut(s) 514
BstAPI GCANNNNNTGC 1 cut(s) 485
BstDEI CTNAG 2 cut(s) 23, 321
BstF5I GGATG 2 cut(s) 215, 307
BstKTI GATC 2 cut(s) 187, 412
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 184, 409
BstMWI GCNNNNNNNGC 3 cut(s) 221, 485, 617
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 172
BsuRI GGCC 3 cut(s) 5, 77, 611
BtsCI GGATG 2 cut(s) 215, 307
BtsIMutI CAGTG 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 512
Cfr10I RCCGGY 2 cut(s) 542, 611
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 345, 448
CviQI GTAC 2 cut(s) 345, 448
DdeI CTNAG 2 cut(s) 23, 321
DpnI GATC 2 cut(s) 186, 411
DpnII GATC 2 cut(s) 184, 409
EaeI YGGCCR 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 219, 426
Eco31I GGTCTC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 254, 383
EcoRI GAATTC 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 219, 426
ErhI CCWWGG 2 cut(s) 219, 426
FaiI YATR 5 cut(s) 107, 154, 209, 261, 476
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 444
FokI GGATG 2 cut(s) 202, 294
GsaI CCCAGC 1 cut(s) 473
HaeIII GGCC 3 cut(s) 5, 77, 611
HapII CCGG 4 cut(s) 78, 86, 543, 612
HgaI GACGC 1 cut(s) 403
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 1 cut(s) 27
HpaII CCGG 4 cut(s) 78, 86, 543, 612
HphI GGTGA 2 cut(s) 419, 529
Hpy166II GTNNAC 2 cut(s) 367, 537
Hpy188I TCNGA 3 cut(s) 26, 402, 600
Hpy188III TCNNGA 3 cut(s) 9, 577, 633
Hpy8I GTNNAC 2 cut(s) 367, 537
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 4 cut(s) 205, 208, 278, 583
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4V TGCA 5 cut(s) 437, 461, 488, 500, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 485, 617
HpyF3I CTNAG 2 cut(s) 23, 321
KpnI GGTACC 1 cut(s) 348
Kzo9I GATC 2 cut(s) 184, 409
LmnI GCTCC 2 cut(s) 179, 625
LweI GCATC 3 cut(s) 224, 448, 555
MalI GATC 2 cut(s) 186, 411
MboI GATC 2 cut(s) 184, 409
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 3 cut(s) 42, 227, 480
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 9 cut(s) 16, 32, 41, 123, 198, 321, 344, 392, 535
MseI TTAA 2 cut(s) 41, 240
MspI CCGG 4 cut(s) 78, 86, 543, 612
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 221, 485, 617
NciI CCSGG 1 cut(s) 86
NdeII GATC 2 cut(s) 184, 409
NlaIV GGNNCC 3 cut(s) 181, 346, 592
PfeI GAWTC 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 181, 346, 592
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 346, 449
RsaNI GTAC 2 cut(s) 345, 448
SaqAI TTAA 2 cut(s) 41, 240
Sau3AI GATC 2 cut(s) 184, 409
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 172
SetI ASST 6 cut(s) 207, 327, 384, 409, 533, 606
SfaNI GCATC 3 cut(s) 224, 448, 555
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 3 cut(s) 42, 227, 480
SsiI CCGC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 219, 426
TaaI ACNGT 1 cut(s) 514
TaqI TCGA 1 cut(s) 549
TasI AATT 3 cut(s) 42, 227, 480
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 41, 240
Tru9I TTAA 2 cut(s) 41, 240
TscAI CASTG 1 cut(s) 163
TspDTI ATGAA 4 cut(s) 39, 94, 135, 224
TspRI CASTG 1 cut(s) 163
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.