Rw0G015910

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00746
OG0000346
Physical Location & Seq
Forward (+)
45772 .. 46595
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015910.1

Sequence Viewer

Length: 540 bp
ATGGCCTTGAGATATTTTGCAGTACTGACATCAGTACCTGCCCTGGCCACTACTTGTAAAAGGGCCGTAGCGGATCCTGACATCCTTTCCGACTTTATAGTGCCGCAAAATACTACGAAAGTTGATGGAACATTTTTCACTTGCACTAAATTCCGTGGACTATTTGATGGAGTTGCTGAAACCTTTAAGGTAACAAAAGCTGCCTTGACTGAGTTCCCTGCTCTTGACGGCAAAGTGTTAAACCCACCTCACACTCACCCTCGCTCAGCTGAACTTTTGTTCCTTGTTGCTGGTTCCTTGGATGTAGGGTTCCTCGACACAAAAAATGTTCTCTATAATCAAAAGCTTCAAGTTGGAGATATCTTTGTGTTTCCAAAGGGACTAGTCCACTATCAGTACAACTTTGCAAATGCCGGAACAGTTTCGGTGCCACTATCAGTGTTTGCCCCTGGGATTGATGATGAGATCCTTGCCAAGTCATTCAAGACTGACGTTCATACCATTGAGAATATCAATGCTGGCCTTGTCCCTCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

179

Amino Acids

19.47

Weight (kDa)

6.5

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 80 - 165 3.6e-19 Cupin
Cupin_2 PF07883 81 - 134 8.4e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 427
AciI CCGC 2 cut(s) 71, 104
AclWI GGATC 3 cut(s) 68, 81, 460
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 3 cut(s) 24, 36, 398
AgsI TTSAA 2 cut(s) 350, 484
AhlI ACTAGT 1 cut(s) 382
AjnI CCWGG 2 cut(s) 42, 448
AloI GAACNNNNNNTCC 4 cut(s) 264, 293, 296, 325
AluBI AGCT 3 cut(s) 200, 269, 346
AluI AGCT 3 cut(s) 200, 269, 346
AlwI GGATC 3 cut(s) 68, 81, 460
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 4 cut(s) 3, 45, 63, 520
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 248
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BalI TGGCCA 1 cut(s) 47
BamHI GGATCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 119, 161
BceAI ACGGC 2 cut(s) 50, 244
BciT130I CCWGG 2 cut(s) 44, 450
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 2 cut(s) 104, 201
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 2 cut(s) 105, 202
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 2 cut(s) 44, 450
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 4 cut(s) 75, 295, 311, 429
BmrFI CCNGG 2 cut(s) 44, 450
Bpu1102I GCTNAGC 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 28
BsaJI CCNNGG 5 cut(s) 42, 154, 297, 448, 449
BseBI CCWGG 2 cut(s) 44, 450
BseDI CCNNGG 5 cut(s) 42, 154, 297, 448, 449
BseGI GGATG 2 cut(s) 81, 307
BseMII CTCAG 2 cut(s) 201, 279
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 4 cut(s) 5, 47, 65, 522
BshNI GGYRCC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 2 cut(s) 393, 512
BsmFI GGGAC 2 cut(s) 393, 512
BsnI GGCC 4 cut(s) 5, 47, 65, 522
Bsp143I GATC 2 cut(s) 73, 465
Bsp1720I GCTNAGC 1 cut(s) 265
BspACI CCGC 2 cut(s) 71, 104
BspANI GGCC 4 cut(s) 5, 47, 65, 522
BspCNI CTCAG 2 cut(s) 202, 278
BspLI GGNNCC 4 cut(s) 75, 295, 311, 429
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 3 cut(s) 68, 81, 460
BspT107I GGYRCC 1 cut(s) 427
BssECI CCNNGG 5 cut(s) 42, 154, 297, 448, 449
BssMI GATC 2 cut(s) 73, 465
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 44, 450
Bst4CI ACNGT 1 cut(s) 421
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 2 cut(s) 210, 265
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 2 cut(s) 81, 307
BstKTI GATC 2 cut(s) 76, 468
BstMBI GATC 2 cut(s) 73, 465
BstNI CCWGG 2 cut(s) 44, 450
BstSCI CCNGG 2 cut(s) 42, 448
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 73, 465
BstYI RGATCY 2 cut(s) 73, 465
BsuRI GGCC 4 cut(s) 5, 47, 65, 522
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 2 cut(s) 81, 307
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 520
CaiI CAGNNNCTG 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 3 cut(s) 23, 35, 397
CviJI RGCY 7 cut(s) 5, 47, 65, 200, 269, 346, 522
CviKI_1 RGCY 7 cut(s) 5, 47, 65, 200, 269, 346, 522
CviQI GTAC 3 cut(s) 23, 35, 397
DdeI CTNAG 2 cut(s) 210, 265
DpnI GATC 2 cut(s) 75, 467
DpnII GATC 2 cut(s) 73, 465
EaeI YGGCCR 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 297
Eco32I GATATC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 42, 448
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaiI YATR 4 cut(s) 98, 336, 498, 534
FaqI GGGAC 2 cut(s) 393, 512
Fnu4HI GCNGC 2 cut(s) 104, 201
FokI GGATG 2 cut(s) 68, 314
Fsp4HI GCNGC 2 cut(s) 104, 201
FspBI CTAG 1 cut(s) 383
GluI GCNGC 2 cut(s) 104, 201
HaeIII GGCC 4 cut(s) 5, 47, 65, 522
HapII CCGG 1 cut(s) 414
HindIII AAGCTT 1 cut(s) 344
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 158, 388
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 77, 224, 484
Hpy8I GTNNAC 2 cut(s) 158, 388
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 20, 144, 407
HpyF3I CTNAG 2 cut(s) 210, 265
HpySE526I ACGT 1 cut(s) 492
Kzo9I GATC 2 cut(s) 73, 465
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 1 cut(s) 383
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 75, 467
MboI GATC 2 cut(s) 73, 465
MflI RGATCY 2 cut(s) 73, 465
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 114, 334
MnlI CCTC 4 cut(s) 258, 270, 323, 540
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 421
MscI TGGCCA 1 cut(s) 47
MseI TTAA 2 cut(s) 186, 239
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 2 cut(s) 44, 450
MvaI CCWGG 2 cut(s) 44, 450
NdeII GATC 2 cut(s) 73, 465
NlaIV GGNNCC 4 cut(s) 75, 295, 311, 429
PasI CCCWGGG 1 cut(s) 449
PdmI GAANNNNTTC 1 cut(s) 421
PkrI GCNGC 2 cut(s) 105, 202
Psp6I CCWGG 2 cut(s) 42, 448
PspGI CCWGG 2 cut(s) 42, 448
PspN4I GGNNCC 4 cut(s) 75, 295, 311, 429
PspPI GGNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 73, 465
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 3 cut(s) 24, 36, 398
RsaNI GTAC 3 cut(s) 23, 35, 397
SaqAI TTAA 2 cut(s) 186, 239
SatI GCNGC 2 cut(s) 104, 201
Sau3AI GATC 2 cut(s) 73, 465
Sau96I GGNCC 1 cut(s) 63
ScaI AGTACT 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 44, 450
SetI ASST 8 cut(s) 40, 185, 192, 202, 250, 271, 348, 495
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
SpeI ACTAGT 1 cut(s) 382
Sse9I AATT 1 cut(s) 149
SsiI CCGC 2 cut(s) 71, 104
SspMI CTAG 1 cut(s) 383
StyD4I CCNGG 2 cut(s) 42, 448
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 495
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 149
TatI WGTACW 2 cut(s) 22, 396
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 186, 239
Tru9I TTAA 2 cut(s) 186, 239
TscAI CASTG 1 cut(s) 444
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 485
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 444
XapI RAATTY 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 421
XspI CTAG 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.