RLG00000029836

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000346
Physical Location & Seq
Forward (+)
49998256 .. 49998736
481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029836

Sequence Viewer

Length: 339 bp
ATGAAAGTTGATGGAACATTTTTCACTTACACTAAATTTCGTGGACTATTTGATGGAGTTCCTGAAACCTTTAAGGGGTCGTCGACACTAGAGAGTCAAAAGCTTCAAGTTGGAGATATCTTTGTGTTTCCAAAGGGACTAGTCCACTATCAGTACCACTCACTGCCCAACATGCCAGCCATTGCTGTTTCAGCATTTGGAAGTGCAAATGCCGGAACAGTTTCGGTGCCACTATCAGTGTTCGCCACTGGGATTGACGATGAGATCCTCGCCAAGTCATTCAAGACTGACGTTGATACCATTGAGAAGATCAAGGCTGGCCTTGTCCCTCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

113

Amino Acids

12.12

Weight (kDa)

6.82

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 27 - 100 1.1e-13 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 83
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 107, 283
AhlI ACTAGT 1 cut(s) 139
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 1 cut(s) 259
AoxI GGCC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 226
BccI CCATC 2 cut(s) 5, 47
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 2 cut(s) 89, 140
BmiI GGNNCC 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 253
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 2 cut(s) 150, 311
BslI CCNNNNNNNGG 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 150, 311
BsnI GGCC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 264, 309
BspANI GGCC 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 253
BssMI GATC 2 cut(s) 264, 309
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 177, 319
BstKTI GATC 2 cut(s) 267, 312
BstMBI GATC 2 cut(s) 264, 309
BstMWI GCNNNNNNNGC 2 cut(s) 172, 191
BstNSI RCATGY 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 3 cut(s) 161, 243, 246
Cac8I GCNNGC 2 cut(s) 177, 319
Csp6I GTAC 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 103, 179, 317, 321
CviKI_1 RGCY 4 cut(s) 103, 179, 317, 321
CviQI GTAC 1 cut(s) 154
DpnI GATC 2 cut(s) 266, 311
DpnII GATC 2 cut(s) 264, 309
Eco32I GATATC 1 cut(s) 118
EcoRV GATATC 1 cut(s) 118
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 173, 333
FaqI GGGAC 2 cut(s) 150, 311
FatI CATG 1 cut(s) 171
FblI GTMKAC 1 cut(s) 83
FspBI CTAG 2 cut(s) 89, 140
HaeIII GGCC 1 cut(s) 321
HapII CCGG 1 cut(s) 213
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 3 cut(s) 44, 84, 145
Hpy188III TCNNGA 2 cut(s) 62, 283
Hpy8I GTNNAC 3 cut(s) 44, 84, 145
Hpy99I CGWCG 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 191
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 2 cut(s) 264, 309
LpnPI CCDG 5 cut(s) 75, 189, 226, 234, 303
MaeI CTAG 2 cut(s) 89, 140
MaeII ACGT 1 cut(s) 291
MalI GATC 2 cut(s) 266, 311
MboI GATC 2 cut(s) 264, 309
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 264
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 2 cut(s) 278, 339
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 1 cut(s) 72
MspI CCGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 172, 191
NdeII GATC 2 cut(s) 264, 309
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 228
NspI RCATGY 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 220
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 264
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SalI GTCGAC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 2 cut(s) 264, 309
SchI GAGTC 1 cut(s) 103
SetI ASST 3 cut(s) 71, 105, 294
SpeI ACTAGT 1 cut(s) 139
Sse9I AATT 1 cut(s) 35
SspMI CTAG 2 cut(s) 89, 140
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 35
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 3 cut(s) 168, 243, 253
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 168, 243, 253
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 2 cut(s) 89, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.