RLG00000034450

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000346
Physical Location & Seq
Reverse (-)
42859081 .. 42859695
615 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034450

Sequence Viewer

Length: 615 bp
ATGGCCTCTACACTCAAATTCATCTCCCTACTAATTTCTTCATTCGCCATAATTCAAATGGCATTGGCTGACCCGGATATTATTTCGGATTTCATTACACCTACTCCAAATGCAACAGTAAATGCAAACTACTTCACATTCACCGGCATGCGTGTTCTTGTTGGAGGAACCCCTCCCTTAACCTTCACCGTATTGAAGGCAACCTTGGCAGAGTTCCCTGCTCTTTTCGGGCAGAGTGTGTCATATGCTGTCCAATTCCCATCTGGCACAGTTAACCCACTACACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTCGTTGATGCCACCCTTGAAGTGGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAAACTATTCAAGCCGGTGACCTGTTTGTGTTTCCCAAGGGACTTGTGCACTACCAGTACAATGCTGATGCACAAAACCCGGCTCTAGCCATTTCGGCCTTTGGAAGCGCAAGTGCTGGAACTGTATCAGTTCCTCCCACTTTGTTCACCACTAATATTGATGATAATGTCCTTGCTTTGTCACTGAAGACTGATGTAGCCACCGTTCAGAAACTCAAAGCTGGACTTGCTCCGAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

205

Amino Acids

21.64

Weight (kDa)

5.43

Isoelectric Point (pI)

20.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 67 - 193 1.5e-24 Cupin
Cupin_2 PF07883 84 - 156 4.6e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 4 cut(s) 56, 196, 335, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 307, 593
AluI AGCT 2 cut(s) 307, 593
Alw21I GWGCWC 2 cut(s) 309, 423
Alw44I GTGCAC 1 cut(s) 419
AoxI GGCC 2 cut(s) 3, 468
ApaLI GTGCAC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 74, 452
AsuHPI GGTGA 4 cut(s) 133, 178, 401, 511
BaeGI GKGCMC 1 cut(s) 423
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 2 cut(s) 309, 423
BccI CCATC 1 cut(s) 268
BcnI CCSGG 2 cut(s) 74, 452
BfaI CTAG 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 467
BlpI GCTNAGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 74, 452
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 74, 452
BmsI GCATC 2 cut(s) 313, 430
BpiI GAAGAC 1 cut(s) 566
Bpu1102I GCTNAGC 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 74, 452
BsaJI CCNNGG 2 cut(s) 204, 408
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse118I RCCGGY 2 cut(s) 143, 386
Bse1I ACTGG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 204, 408
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 423
BshFI GGCC 2 cut(s) 5, 470
BsiHKAI GWGCWC 2 cut(s) 309, 423
BsiSI CCGG 4 cut(s) 74, 144, 387, 452
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 2 cut(s) 5, 470
Bsp1286I GDGCHC 2 cut(s) 309, 423
Bsp1720I GCTNAGC 1 cut(s) 303
BspANI GGCC 2 cut(s) 5, 470
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 169
BsrFI RCCGGY 2 cut(s) 143, 386
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 2 cut(s) 143, 386
BssECI CCNNGG 2 cut(s) 204, 408
BssT1I CCWWGG 2 cut(s) 204, 408
Bst4CI ACNGT 5 cut(s) 118, 190, 271, 496, 577
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 482
BstMWI GCNNNNNNNGC 3 cut(s) 206, 467, 599
BstNSI RCATGY 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 2 cut(s) 72, 450
BstSLI GKGCMC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 566
BsuRI GGCC 2 cut(s) 5, 470
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 554
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 482
Cfr10I RCCGGY 2 cut(s) 143, 386
Csp6I GTAC 1 cut(s) 430
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 2 cut(s) 148, 612
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 204, 408
Eco24I GRGCYC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 578
Eco91I GGTNACC 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 307
EcoO65I GGTNACC 1 cut(s) 389
EcoT14I CCWWGG 2 cut(s) 204, 408
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 2 cut(s) 204, 408
FaeI CATG 2 cut(s) 151, 615
FaiI YATR 5 cut(s) 50, 149, 244, 246, 613
FalI AAGNNNNNCTT 4 cut(s) 188, 220, 582, 614
FaqI GGGAC 1 cut(s) 426
FatI CATG 2 cut(s) 147, 611
FauNDI CATATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 348
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 309
FspBI CTAG 1 cut(s) 458
GlaI GCGC 1 cut(s) 481
HaeIII GGCC 2 cut(s) 5, 470
HapII CCGG 4 cut(s) 74, 144, 387, 452
HhaI GCGC 1 cut(s) 482
Hin1II CATG 2 cut(s) 151, 615
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HincII GTYRAC 2 cut(s) 274, 349
HindII GTYRAC 2 cut(s) 274, 349
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 4 cut(s) 74, 144, 387, 452
HphI GGTGA 4 cut(s) 133, 178, 401, 511
Hpy166II GTNNAC 4 cut(s) 274, 349, 421, 519
Hpy188I TCNGA 3 cut(s) 88, 582, 606
Hpy8I GTNNAC 4 cut(s) 274, 349, 421, 519
HpyAV CCTTC 2 cut(s) 190, 193
HpyCH4III ACNGT 5 cut(s) 118, 190, 271, 496, 577
HpyCH4V TGCA 4 cut(s) 113, 125, 421, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 467, 599
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 2 cut(s) 151, 615
HspAI GCGC 1 cut(s) 480
KspAI GTTAAC 1 cut(s) 274
LmnI GCTCC 2 cut(s) 312, 607
LweI GCATC 2 cut(s) 313, 430
MaeI CTAG 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 389, 552
MboII GAAGA 3 cut(s) 30, 304, 571
MhlI GDGCHC 2 cut(s) 309, 423
MluCI AATT 4 cut(s) 17, 33, 51, 254
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 8 cut(s) 16, 158, 183, 303, 320, 326, 374, 516
MseI TTAA 2 cut(s) 179, 273
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 4 cut(s) 74, 144, 387, 452
MspR9I CCNGG 2 cut(s) 74, 452
MwoI GCNNNNNNNGC 3 cut(s) 206, 467, 599
NciI CCSGG 2 cut(s) 74, 452
NdeI CATATG 1 cut(s) 244
NlaIII CATG 2 cut(s) 151, 615
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 389, 552
NspI RCATGY 1 cut(s) 151
PaeI GCATGC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 309
PspEI GGTNACC 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 169
PsrI GAACNNNNNNTAC 2 cut(s) 561, 593
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 309
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 2 cut(s) 179, 273
ScrFI CCNGG 2 cut(s) 74, 452
SduI GDGCHC 2 cut(s) 309, 423
SetI ASST 7 cut(s) 103, 185, 206, 309, 366, 396, 595
SfaNI GCATC 2 cut(s) 313, 430
SmiMI CAYNNNNRTG 1 cut(s) 146
SphI GCATGC 1 cut(s) 151
Sse9I AATT 4 cut(s) 17, 33, 51, 254
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 72, 450
StyI CCWWGG 2 cut(s) 204, 408
TaaI ACNGT 5 cut(s) 118, 190, 271, 496, 577
TaqI TCGA 1 cut(s) 348
TasI AATT 4 cut(s) 17, 33, 51, 254
TatI WGTACW 1 cut(s) 429
Tru1I TTAA 2 cut(s) 179, 273
Tru9I TTAA 2 cut(s) 179, 273
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 2 cut(s) 389, 552
Tsp45I GTSAC 2 cut(s) 389, 552
TspDTI ATGAA 3 cut(s) 10, 30, 82
TspRI CASTG 1 cut(s) 561
VneI GTGCAC 1 cut(s) 419
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 3 cut(s) 55, 260, 334
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.