MD11G1169300.v1.1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000346
Physical Location & Seq
Reverse (-)
18146732 .. 18147226
495 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1169300.v1.1.491

Sequence Viewer

Length: 495 bp
ATGTCATCCAACTCAAATTTAGTTAATCAGGTTTCAACAATGGCCTCCAGAACATCCAGCCTCAGATTCCTCTCACTACTAGTTTTTTCGTATGACATTGTTCAAATGGCAATGGCCGGAGACCCGGACATTATTACTGACTTCATAGTGCCTCCAAATGAAAATGGAACAGTAAATGGAAACTTCTTTACATACACTGGCTTTCGTGCCCTTGTTGGAGGAGGCCCTCCCACTCCCTTCAACGTTATGAAGGCATCCTTGGCTGAATTCCCTGCTCTTAATGGGCAGAGTGTTTCGTATGCCGTCCTTCAGTTCCCAAATAATGGCACGACCAACCCACCACACACTCATCCTCGCTCTGCTGAGTTACTTTTCCTCGTTGGCGGTACCCTTGAAGTTGGTTTCGTTGACACCAAAAACAACCTCTTTAGGCAGACGCTTCAGGCAGGTGATCTTTTTGTGTTTCTCAAGGGACTTGCACACTTACAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

165

Amino Acids

17.74

Weight (kDa)

6.25

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 82 - 163 8e-19 Cupin
Cupin_2 PF07883 105 - 161 1.9e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 437
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 323
AciI CCGC 1 cut(s) 384
AclI AACGTT 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 16, 266
AcuI CTGAAG 2 cut(s) 293, 425
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 4 cut(s) 36, 104, 241, 395
AhlI ACTAGT 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 3 cut(s) 42, 114, 223
ApoI RAATTY 2 cut(s) 16, 266
Asp718I GGTACC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 437
Bme1390I CCNGG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 4 cut(s) 5, 53, 254, 349
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 76, 354
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 211
BshFI GGCC 3 cut(s) 44, 116, 225
BshNI GGYRCC 1 cut(s) 386
BsiSI CCGG 2 cut(s) 117, 125
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 3 cut(s) 44, 116, 225
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 451
BspACI CCGC 1 cut(s) 384
BspANI GGCC 3 cut(s) 44, 116, 225
BspCNI CTCAG 2 cut(s) 75, 355
BspLI GGNNCC 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 451
BssT1I CCWWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 62, 363
BstF5I GGATG 4 cut(s) 5, 53, 254, 349
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 211
BsuRI GGCC 3 cut(s) 44, 116, 225
BtsCI GGATG 4 cut(s) 5, 53, 254, 349
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 437
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 387
CviJI RGCY 6 cut(s) 44, 60, 116, 201, 225, 263
CviKI_1 RGCY 6 cut(s) 44, 60, 116, 201, 225, 263
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 2 cut(s) 62, 363
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 114
Eco57I CTGAAG 2 cut(s) 293, 425
EcoO109I RGGNCCY 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaiI YATR 5 cut(s) 93, 146, 193, 248, 300
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 486
FokI GGATG 3 cut(s) 40, 241, 336
FspBI CTAG 1 cut(s) 80
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 3 cut(s) 44, 116, 225
HapII CCGG 2 cut(s) 117, 125
HgaI GACGC 1 cut(s) 445
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 1 cut(s) 66
HpaII CCGG 2 cut(s) 117, 125
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 3 cut(s) 244, 247, 317
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 62, 363
HpySE526I ACGT 1 cut(s) 243
KpnI GGTACC 1 cut(s) 390
Kzo9I GATC 1 cut(s) 451
LpnPI CCDG 9 cut(s) 14, 61, 70, 130, 138, 183, 285, 428, 432
LweI GCATC 1 cut(s) 263
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 366
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 2 cut(s) 16, 266
MmeI TCCRAC 2 cut(s) 33, 196
MseI TTAA 2 cut(s) 24, 279
MspI CCGG 2 cut(s) 117, 125
MspR9I CCNGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 125
NdeII GATC 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 1 cut(s) 224
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 24, 279
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 211
SetI ASST 4 cut(s) 33, 246, 426, 451
SfaNI GCATC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 2 cut(s) 16, 266
SsiI CCGC 1 cut(s) 384
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 246
TasI AATT 2 cut(s) 16, 266
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 2 cut(s) 24, 279
Tru9I TTAA 2 cut(s) 24, 279
TscAI CASTG 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 133, 174, 263
TspRI CASTG 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 323
XapI RAATTY 2 cut(s) 16, 266
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.