Rmu_sc0002264.1_g000001

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002264.1
OG0000346
Physical Location & Seq
Forward (+)
6904 .. 7302
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002264.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atggccagagtgtttcatatgccgtccttgaattcccagctggcactactaagtactaacccaccacacactcatcctcgctctgctgagctcctcttccttattgacggtacccttgaagttggctttgtcgacacaaagaacaacctctttactcagactcttcagataggcgacctgtttgtttttcccaagggactcgtgcacttccaatacaatgctgactcagaaaacccagctatagcaatttctgcttttggaagtgcaagtgcaggaactgtgtcaattccttccactttgttcgccaccaacatcgatgacaatgtcttggctttgtcctttaagactgatgtagctaccattcaaaagcttaaggctggtctcgctcccaagccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

132

Amino Acids

14.14

Weight (kDa)

6.01

Isoelectric Point (pI)

21.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 2 cut(s) 55, 112
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 31, 119, 365
AluBI AGCT 5 cut(s) 40, 91, 239, 356, 370
AluI AGCT 5 cut(s) 40, 91, 239, 356, 370
Alw21I GWGCWC 2 cut(s) 93, 207
Alw26I GTCTC 1 cut(s) 386
Alw44I GTGCAC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 31
Asp718I GGTACC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 93
BauI CACGAG 1 cut(s) 200
Bbv12I GWGCWC 2 cut(s) 93, 207
BceAI ACGGC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 371
BlpI GCTNAGC 1 cut(s) 87
BmcAI AGTACT 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 112
Bpu1102I GCTNAGC 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 78, 170, 240
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 207
BseYI CCCAGC 2 cut(s) 36, 235
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 93, 207
BslFI GGGAC 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 93, 207
Bsp1720I GCTNAGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 79, 169, 239
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 192
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 110, 280
Bst6I CTCTTC 2 cut(s) 101, 168
BstAFI CTTAAG 1 cut(s) 371
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 4 cut(s) 50, 87, 156, 226
BstF5I GGATG 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 386
BstMWI GCNNNNNNNGC 2 cut(s) 251, 383
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 278
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 2 cut(s) 54, 111
CviAII CATG 1 cut(s) 396
CviQI GTAC 2 cut(s) 54, 111
DdeI CTNAG 4 cut(s) 50, 87, 156, 226
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 101, 168
EarI CTCTTC 2 cut(s) 101, 168
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 1 cut(s) 399
FaiI YATR 4 cut(s) 18, 20, 242, 397
FaqI GGGAC 1 cut(s) 210
FatI CATG 1 cut(s) 395
FauNDI CATATG 1 cut(s) 18
FblI GTMKAC 1 cut(s) 132
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 93
GsaI CCCAGC 2 cut(s) 40, 239
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 399
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 3 cut(s) 160, 198, 224
Hpy166II GTNNAC 2 cut(s) 133, 205
Hpy188I TCNGA 3 cut(s) 159, 168, 229
Hpy8I GTNNAC 2 cut(s) 133, 205
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 2 cut(s) 110, 280
HpyCH4V TGCA 3 cut(s) 205, 266, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 383
HpyF3I CTNAG 4 cut(s) 50, 87, 156, 226
Hsp92II CATG 1 cut(s) 399
KpnI GGTACC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 96, 391
LpnPI CCDG 7 cut(s) 19, 26, 50, 191, 249, 258, 363
MboII GAAGA 2 cut(s) 88, 155
MhlI GDGCHC 2 cut(s) 93, 207
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 31, 246, 285
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 154, 192, 218
MnlI CCTC 3 cut(s) 87, 104, 158
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 342, 372
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 251, 383
NdeI CATATG 1 cut(s) 18
NlaIII CATG 1 cut(s) 399
NlaIV GGNNCC 1 cut(s) 112
PflFI GACNNNGTC 1 cut(s) 323
PleI GAGTC 3 cut(s) 154, 192, 218
PpsI GAGTC 3 cut(s) 154, 192, 218
Psp124BI GAGCTC 1 cut(s) 93
PspFI CCCAGC 2 cut(s) 36, 235
PspN4I GGNNCC 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 278
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 2 cut(s) 55, 112
RsaNI GTAC 2 cut(s) 54, 111
SacI GAGCTC 1 cut(s) 93
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 342, 372
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 3 cut(s) 154, 192, 218
SduI GDGCHC 2 cut(s) 93, 207
SetI ASST 7 cut(s) 42, 93, 150, 180, 241, 358, 372
SfcI CTRYAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 3 cut(s) 31, 246, 285
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 110, 280
TaqI TCGA 2 cut(s) 132, 315
TasI AATT 3 cut(s) 31, 246, 285
TatI WGTACW 1 cut(s) 53
Tru1I TTAA 2 cut(s) 342, 372
Tru9I TTAA 2 cut(s) 342, 372
TspDTI ATGAA 1 cut(s) 5
Tth111I GACNNNGTC 1 cut(s) 323
Vha464I CTTAAG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 203
XapI RAATTY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.