Rh5CG345900

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000346
Physical Location & Seq
Forward (+)
39889901 .. 39890752
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG345900.1

Sequence Viewer

Length: 624 bp
ATGGCCTCGAGAACTTCAACCCTAAAATTCTTCTCACTAATAATCTGTTCTCTTGCAATCGCTGAAATGGCAATGGCCGGAGATCCAGATATTCTTAGTGACTTCATTGCGCCCCCAAATAGAACAGTAGATGGAAACTTCTTCACATACACCGGCCTGCGTGTTATCTTTCAAGAAGATCCCAAAAACTTCACAGTTCTGAAGGCAACCTCCGCTGAGTTCCCTGCTCTTAATGGTCAGAGTGTTTCATATGCAGTACTTGAATTCCCTTCTGGCACTACTAACCCACCTCACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTGTTGGCGGTTCCCTTGAAGTTGGCTTTGTCGACACAAAAAACAACCTCTTTACTCAGACTCTTCAGGTAGGTGACCTGTTTGTTTTTCCCAAGGGACTTGTACACTTCCAATACAATGCTGACTCAGAAAGCCCAGCTATAGCAATTTCTGCTTTTGGAAGTGCAAGTGCAGGAACTGTGTCAATTCCTTCCACTTTGTTCGCCACCAACATCGATGACAATGTCTTGGCTTTGTCCTTCAAGACTGACGTATCTACCATTCAAAAGCTTAAGGCTGGTCTCGCTCCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

207

Amino Acids

22.09

Weight (kDa)

5.07

Isoelectric Point (pI)

25.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 61 - 196 7.8e-32 Cupin
Cupin_2 PF07883 86 - 159 7.6e-11 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AciI CCGC 2 cut(s) 213, 333
AclWI GGATC 2 cut(s) 77, 173
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 2 cut(s) 26, 263
AcuI CTGAAG 2 cut(s) 221, 374
AfaI GTAC 2 cut(s) 258, 429
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 6 cut(s) 18, 173, 263, 344, 568, 590
AluBI AGCT 3 cut(s) 316, 464, 595
AluI AGCT 3 cut(s) 316, 464, 595
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 2 cut(s) 77, 173
AlwNI CAGNNNCTG 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 3 cut(s) 3, 75, 154
ApoI RAATTY 2 cut(s) 26, 263
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 7
BaeI ACNNNNGTAYC 2 cut(s) 561, 594
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 611
BfmI CTRYAG 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 596
BlpI GCTNAGC 1 cut(s) 312
BmcAI AGTACT 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 1 cut(s) 417
Bse118I RCCGGY 1 cut(s) 152
Bse3DI GCAATG 2 cut(s) 78, 105
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 298
BseMI GCAATG 2 cut(s) 78, 105
BseMII CTCAG 4 cut(s) 207, 303, 395, 465
BseRI GAGGAG 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 460
BsgI GTGCAG 1 cut(s) 516
BshFI GGCC 3 cut(s) 5, 77, 156
BshVI ATCGAT 1 cut(s) 540
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 2 cut(s) 78, 153
BslFI GGGAC 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 3 cut(s) 5, 77, 156
Bso31I GGTCTC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 318
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 2 cut(s) 82, 178
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 2 cut(s) 213, 333
BspANI GGCC 3 cut(s) 5, 77, 156
BspCNI CTCAG 4 cut(s) 208, 304, 394, 464
BspDI ATCGAT 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 337
BspPI GGATC 2 cut(s) 77, 173
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 611
BsrDI GCAATG 2 cut(s) 78, 105
BsrFI RCCGGY 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 82, 178
BssT1I CCWWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 127, 196, 505
Bst6I CTCTTC 2 cut(s) 326, 393
BstAFI CTTAAG 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 476
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 5 cut(s) 95, 216, 312, 381, 451
BstEII GGTNACC 1 cut(s) 398
BstF5I GGATG 1 cut(s) 298
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 2 cut(s) 85, 181
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 2 cut(s) 82, 178
BstMWI GCNNNNNNNGC 4 cut(s) 68, 212, 476, 608
BstPI GGTNACC 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 465
BstX2I RGATCY 2 cut(s) 82, 178
BstYI RGATCY 2 cut(s) 82, 178
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 3 cut(s) 5, 77, 156
BsuTUI ATCGAT 1 cut(s) 540
BtsCI GGATG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 158
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 540
Csp6I GTAC 2 cut(s) 257, 428
CviAII CATG 1 cut(s) 621
CviQI GTAC 2 cut(s) 257, 428
DdeI CTNAG 5 cut(s) 95, 216, 312, 381, 451
DpnI GATC 2 cut(s) 84, 180
DpnII GATC 2 cut(s) 82, 178
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 2 cut(s) 326, 393
EarI CTCTTC 2 cut(s) 326, 393
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 611
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 2 cut(s) 221, 374
Eco88I CYCGRG 1 cut(s) 7
Eco91I GGTNACC 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 316
EcoO65I GGTNACC 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 1 cut(s) 624
FaiI YATR 5 cut(s) 148, 250, 252, 467, 622
FaqI GGGAC 1 cut(s) 435
FatI CATG 1 cut(s) 620
FauNDI CATATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 357
FokI GGATG 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 318
GlaI GCGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 464
HaeIII GGCC 3 cut(s) 5, 77, 156
HapII CCGG 2 cut(s) 78, 153
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 624
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 385, 449
HpaII CCGG 2 cut(s) 78, 153
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 358, 430
Hpy188I TCNGA 4 cut(s) 201, 240, 384, 454
Hpy188III TCNNGA 4 cut(s) 9, 86, 173, 568
Hpy8I GTNNAC 2 cut(s) 358, 430
HpyAV CCTTC 4 cut(s) 196, 279, 525, 574
HpyCH4III ACNGT 3 cut(s) 127, 196, 505
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 4 cut(s) 56, 254, 491, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 212, 476, 608
HpyF3I CTNAG 5 cut(s) 95, 216, 312, 381, 451
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 1 cut(s) 624
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 82, 178
LmnI GCTCC 2 cut(s) 321, 616
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 98, 398
MalI GATC 2 cut(s) 84, 180
MboI GATC 2 cut(s) 82, 178
MboII GAAGA 5 cut(s) 22, 133, 188, 313, 380
MflI RGATCY 2 cut(s) 82, 178
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 4 cut(s) 26, 263, 471, 510
MlyI GAGTC 2 cut(s) 379, 443
MnlI CCTC 6 cut(s) 16, 220, 300, 312, 329, 383
MseI TTAA 2 cut(s) 231, 597
MspA1I CMGCKG 1 cut(s) 215
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 2 cut(s) 78, 153
MwoI GCNNNNNNNGC 4 cut(s) 68, 212, 476, 608
NdeI CATATG 1 cut(s) 250
NdeII GATC 2 cut(s) 82, 178
NlaIII CATG 1 cut(s) 624
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 2 cut(s) 98, 398
PaeR7I CTCGAG 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 548
PleI GAGTC 2 cut(s) 379, 443
PpsI GAGTC 2 cut(s) 379, 443
Psp124BI GAGCTC 1 cut(s) 318
PspEI GGTNACC 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 82, 178
PsyI GACNNNGTC 1 cut(s) 548
RsaI GTAC 2 cut(s) 258, 429
RsaNI GTAC 2 cut(s) 257, 428
SacI GAGCTC 1 cut(s) 318
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 2 cut(s) 231, 597
Sau3AI GATC 2 cut(s) 82, 178
ScaI AGTACT 1 cut(s) 258
SchI GAGTC 2 cut(s) 379, 443
SduI GDGCHC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 7, 596
SmoI CTYRAG 2 cut(s) 7, 596
Sse9I AATT 4 cut(s) 26, 263, 471, 510
SsiI CCGC 2 cut(s) 213, 333
SstI GAGCTC 1 cut(s) 318
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 127, 196, 505
TaiI ACGT 1 cut(s) 579
TaqI TCGA 3 cut(s) 8, 357, 540
TasI AATT 4 cut(s) 26, 263, 471, 510
TatI WGTACW 2 cut(s) 256, 427
Tru1I TTAA 2 cut(s) 231, 597
Tru9I TTAA 2 cut(s) 231, 597
TseFI GTSAC 2 cut(s) 98, 398
Tsp45I GTSAC 2 cut(s) 98, 398
TspDTI ATGAA 2 cut(s) 94, 237
Tth111I GACNNNGTC 1 cut(s) 548
Vha464I CTTAAG 1 cut(s) 596
XapI RAATTY 2 cut(s) 26, 263
XhoI CTCGAG 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.