pycom13g26450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000346
Physical Location & Seq
Forward (+)
23069533 .. 23071107
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26450.5

Sequence Viewer

Length: 1071 bp
ATGAAAGCACCCTTATCAAAACCCAGAACCAAAACGCACAGCCATAATGCCTCCAACCCTTTCCGACCACAACCTCAGGAGAAGGATTTTCTCCCCTCTTTTTTTCCCTCCACTTCCCTCACTTCCTATTTGAACGGTCACGAGAAAGACAAAATAGAGAGTGTGAGAGGAGGGGATGGAAAGAGGATAAGAGATAATCTTAGTCCCTTACTTCAAACTACACCTACACCTCCAAGAATTTTAAATCCCATCGCACCCCACGGACCCAAGCTCCATATTCAAAAGTCGAACCTCACTACAATTTCTAGCAGCCACAAAGCCCTTAGGCTTTGGCTACGCCTGAGTTTTGCTTGGGATTTCCAAAGGAAAATAGTACAAGGGACGGGCGGAGAGTTGGGGAAGAAGATAGAGGGTGGAGTGTGCAGGACCTGTGATGGTATGAAGGTGACAACCAAGACTACGACAGCGAAAGATGGGGAGCTGCCACAATTTGGTGTTTGCTGTCTGAGCAGGGGATTTGTTTCTTGGGCTTGTGCATATTTCACGGTGGAGAGGGGAGATGGACGGCCGAGAAGAGTGATAAAGCCTAGGGTTCGAAATGGGGAGCTCCAACTTTTTAAACTCAAAAACAATTTTCAAGTTTTAGGCCTTAAAAACTTGTTTGATAGTCTATTCTCTAAAAACATAAAAAATGAGTATTTAGAGTTTTTAAACTTAAACTCACTCCTTTCTTTTCTCCCCCTCCTCCCTTCTCACTCCAAATCTATCTCTTTCTTTTCTTCTTTCTCTCCTCCTTTGTTTTTTTTTTTTTTTACCTTTTTTGTTTCTCCTCCAATCTGCTATCTTCATTCTCTAGGTTATTTCTCTCACTCCTCTTCCTCTCTATCTCATCTGATTCTTTCTCTTCCTATCTTGTCTAATTCTCTCTCTTCTTTCTCTTTCCTTCAATTATCTCTTACTTTCTTTCCTCCTCTCTCATCTATCTATCTCTTCTGCGACCCCCTCTTTTTAGATCTCTTTGTCTACAAAAATGTTTTGAGAAATGATAAAAATTTTCAAATAGGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

40.29

Weight (kDa)

9.85

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 491
AccI GTMKAC 1 cut(s) 1023
AciI CCGC 1 cut(s) 387
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 2 cut(s) 237, 1051
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 6 cut(s) 133, 215, 281, 638, 947, 1058
AluBI AGCT 3 cut(s) 271, 481, 607
AluI AGCT 3 cut(s) 271, 481, 607
Alw21I GWGCWC 1 cut(s) 609
AlwNI CAGNNNCTG 1 cut(s) 429
AoxI GGCC 2 cut(s) 566, 646
ApeKI GCWGC 2 cut(s) 309, 481
ApoI RAATTY 2 cut(s) 237, 1051
AspA2I CCTAGG 1 cut(s) 587
AspS9I GGNCC 2 cut(s) 263, 426
AsuHPI GGTGA 1 cut(s) 457
AsuII TTCGAA 1 cut(s) 595
AvaII GGWCC 2 cut(s) 263, 426
AvrII CCTAGG 1 cut(s) 587
AxyI CCTNAGG 2 cut(s) 75, 323
BanII GRGCYC 1 cut(s) 609
BauI CACGAG 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 2 cut(s) 321, 468
BccI CCATC 5 cut(s) 170, 257, 428, 467, 554
BceAI ACGGC 1 cut(s) 581
BciVI GTATCC 1 cut(s) 1058
BfaI CTAG 3 cut(s) 306, 588, 854
BfuI GTATCC 1 cut(s) 1058
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 2 cut(s) 310, 482
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 2 cut(s) 311, 483
Bme18I GGWCC 2 cut(s) 263, 426
BmgT120I GGNCC 2 cut(s) 263, 426
BmiI GGNNCC 1 cut(s) 265
Bpu14I TTCGAA 1 cut(s) 595
BsaJI CCNNGG 2 cut(s) 259, 587
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse21I CCTNAGG 2 cut(s) 75, 323
BseDI CCNNGG 2 cut(s) 259, 587
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 3 cut(s) 89, 332, 497
BseRI GAGGAG 6 cut(s) 183, 734, 780, 819, 862, 960
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 2 cut(s) 321, 468
BsgI GTGCAG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 2 cut(s) 568, 648
BsiEI CGRYCG 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 609
BslFI GGGAC 2 cut(s) 189, 394
BslI CCNNNNNNNGG 1 cut(s) 491
BsmFI GGGAC 2 cut(s) 189, 394
BsnI GGCC 2 cut(s) 568, 648
Bsp119I TTCGAA 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 1 cut(s) 1012
BspACI CCGC 1 cut(s) 387
BspANI GGCC 2 cut(s) 568, 648
BspCNI CTCAG 3 cut(s) 88, 333, 498
BspLI GGNNCC 1 cut(s) 265
BspT104I TTCGAA 1 cut(s) 595
BssECI CCNNGG 2 cut(s) 259, 587
BssMI GATC 1 cut(s) 1012
BssSI CACGAG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 137, 547
Bst6I CTCTTC 5 cut(s) 568, 880, 909, 934, 995
BstBI TTCGAA 1 cut(s) 595
BstDEI CTNAG 5 cut(s) 75, 200, 323, 341, 506
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 1015
BstMBI GATC 1 cut(s) 1012
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 321, 468
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
BstZI CGGCCG 1 cut(s) 566
Bsu36I CCTNAGG 2 cut(s) 75, 323
BsuI GTATCC 1 cut(s) 1058
BsuRI GGCC 2 cut(s) 568, 648
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 429
Cfr13I GGNCC 2 cut(s) 263, 426
Csp6I GTAC 1 cut(s) 374
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 5 cut(s) 75, 200, 323, 341, 506
DpnI GATC 1 cut(s) 1014
DpnII GATC 1 cut(s) 1012
DraI TTTAAA 3 cut(s) 243, 619, 711
EaeI YGGCCR 1 cut(s) 566
EagI CGGCCG 1 cut(s) 566
Eam1104I CTCTTC 5 cut(s) 568, 880, 909, 934, 995
EarI CTCTTC 5 cut(s) 568, 880, 909, 934, 995
EciI GGCGGA 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 607
EclXI CGGCCG 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 587
Eco147I AGGCCT 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 609
Eco47I GGWCC 2 cut(s) 263, 426
Eco52I CGGCCG 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 607
Eco81I CCTNAGG 2 cut(s) 75, 323
EcoICRI GAGCTC 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 587
FaiI YATR 5 cut(s) 45, 276, 440, 538, 686
FaqI GGGAC 2 cut(s) 189, 394
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 2 cut(s) 310, 482
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 2 cut(s) 310, 482
FspBI CTAG 3 cut(s) 306, 588, 854
GluI GCNGC 2 cut(s) 310, 482
HaeIII GGCC 2 cut(s) 568, 648
HinfI GANTC 1 cut(s) 895
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 1 cut(s) 1024
Hpy188I TCNGA 3 cut(s) 65, 507, 894
Hpy188III TCNNGA 2 cut(s) 77, 140
Hpy8I GTNNAC 1 cut(s) 1024
HpyAV CCTTC 4 cut(s) 76, 436, 759, 953
HpyCH4III ACNGT 2 cut(s) 137, 547
HpyCH4V TGCA 2 cut(s) 423, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 507
HpyF3I CTNAG 5 cut(s) 75, 200, 323, 341, 506
Kzo9I GATC 1 cut(s) 1012
LmnI GCTCC 4 cut(s) 276, 478, 604, 612
LpnPI CCDG 6 cut(s) 37, 62, 353, 409, 442, 496
Lsp1109I GCAGC 2 cut(s) 321, 468
MaeI CTAG 3 cut(s) 306, 588, 854
MaeIII GTNAC 2 cut(s) 137, 445
MalI GATC 1 cut(s) 1014
MboI GATC 1 cut(s) 1012
MboII GAAGA 9 cut(s) 412, 415, 585, 771, 836, 867, 896, 921, 982
MflI RGATCY 1 cut(s) 1012
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 7 cut(s) 237, 300, 488, 631, 919, 947, 1051
MmeI TCCRAC 3 cut(s) 78, 88, 634
MseI TTAA 5 cut(s) 242, 618, 651, 710, 716
MwoI GCNNNNNNNGC 1 cut(s) 507
NdeII GATC 1 cut(s) 1012
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 594
NmuCI GTSAC 2 cut(s) 137, 445
NspV TTCGAA 1 cut(s) 595
PceI AGGCCT 1 cut(s) 648
PfeI GAWTC 1 cut(s) 895
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 2 cut(s) 311, 483
PpuMI RGGWCCY 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 2 cut(s) 263, 426
PspPPI RGGWCCY 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 429
PsuI RGATCY 1 cut(s) 1012
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
SacI GAGCTC 1 cut(s) 609
SaqAI TTAA 5 cut(s) 242, 618, 651, 710, 716
SatI GCNGC 2 cut(s) 310, 482
Sau3AI GATC 1 cut(s) 1012
Sau96I GGNCC 2 cut(s) 263, 426
SduI GDGCHC 1 cut(s) 609
SfuI TTCGAA 1 cut(s) 595
SinI GGWCC 2 cut(s) 263, 426
Sse9I AATT 7 cut(s) 237, 300, 488, 631, 919, 947, 1051
SseBI AGGCCT 1 cut(s) 648
SsiI CCGC 1 cut(s) 387
SspMI CTAG 3 cut(s) 306, 588, 854
SstI GAGCTC 1 cut(s) 609
StuI AGGCCT 1 cut(s) 648
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 2 cut(s) 137, 547
TaqI TCGA 2 cut(s) 287, 595
TasI AATT 7 cut(s) 237, 300, 488, 631, 919, 947, 1051
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 1 cut(s) 895
Tru1I TTAA 5 cut(s) 242, 618, 651, 710, 716
Tru9I TTAA 5 cut(s) 242, 618, 651, 710, 716
TseFI GTSAC 2 cut(s) 137, 445
TseI GCWGC 2 cut(s) 309, 481
Tsp45I GTSAC 2 cut(s) 137, 445
TspDTI ATGAA 3 cut(s) 17, 455, 836
TspGWI ACGGA 1 cut(s) 276
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 263, 426
XapI RAATTY 2 cut(s) 237, 1051
XmaJI CCTAGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 1023
XspI CTAG 3 cut(s) 306, 588, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.