Prupe.2G052000_v2.0.a1

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000346
Physical Location & Seq
Reverse (-)
6034188 .. 6034808
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G052000.1

Sequence Viewer

Length: 621 bp
ATGGCCTTGAGATTTGTTCAATTGCTGATCATATTTGTACTGGCCCTGGCCACCTCCCAAAGGATCCTTGCAAGTGATCCAGACATCCTTTTTGACTACATAGTCCCGCCAAATAACAAAGTTGATGCTAATTTCTTTACTTACACCGGATTCCGAGACATATTCGATGATGTTCCTGGAAGCTTAAACGTAACTAAAGCTACCTTGGCTGAGTTCCCTGCTCTTAACGGACAGAGTGTGTCTTACGCCATACTTAAGTATCCTGCAAACGGGGGAGTAAACCCACCTCACACCCACCCTCGCGCTGCTGAGCTTCTGTTCCTTGTTGGTGGTTCCTTGGAAGTAGGGTTCGTGGACACGAAAAACGTTCTATATACTCAGAAGCTTAAAGTTGGAGACCTATTTGTGTTTCCTAAGGGATTAGTCCATTACCAGTATAACTCAGATGCTAATTTACCAGCCTACGCCGTTTCAGCATTTGGAAGTGCAAATGCTGGAACGGTTTCAGTGCCTGTGTCTGTGTTTGGCACTGGAATTGATAATGCCATCCTAGCAAAATCATTCAAGACCGATGTTGGTACCGTTAAGAAGCTCAAGGCTGGCCTCACCACTCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

207

Amino Acids

22.11

Weight (kDa)

8.71

Isoelectric Point (pI)

22.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 578
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 107
AclI AACGTT 1 cut(s) 366
AclWI GGATC 3 cut(s) 58, 71, 71
AcoI YGGCCR 1 cut(s) 48
AfaI GTAC 2 cut(s) 39, 580
AfiI CCNNNNNNNGG 2 cut(s) 60, 269
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 2 cut(s) 20, 565
AjnI CCWGG 2 cut(s) 45, 175
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
AluBI AGCT 5 cut(s) 183, 200, 313, 385, 592
AluI AGCT 5 cut(s) 183, 200, 313, 385, 592
Alw26I GTCTC 2 cut(s) 150, 390
AlwI GGATC 3 cut(s) 58, 71, 71
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 4 cut(s) 3, 42, 48, 601
ApeKI GCWGC 1 cut(s) 305
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 502
Asp718I GGTACC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 598
AxyI CCTNAGG 1 cut(s) 414
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BalI TGGCCA 1 cut(s) 50
BamHI GGATCC 1 cut(s) 63
BanI GGYRCC 1 cut(s) 578
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 554
BceAI ACGGC 1 cut(s) 452
BciT130I CCWGG 2 cut(s) 47, 177
BciVI GTATCC 1 cut(s) 270
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 150, 390
BfaI CTAG 1 cut(s) 551
BfrI CTTAAG 1 cut(s) 254
BfuI GTATCC 1 cut(s) 270
BisI GCNGC 1 cut(s) 306
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 47, 177
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 3 cut(s) 65, 334, 580
BmrFI CCNGG 2 cut(s) 47, 177
BmsI GCATC 2 cut(s) 115, 436
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 28, 578
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 45, 204, 336
BsaWI WCCGGW 1 cut(s) 146
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 269
Bse1I ACTGG 3 cut(s) 45, 433, 535
Bse21I CCTNAGG 1 cut(s) 414
BseBI CCWGG 2 cut(s) 47, 177
BseDI CCNNGG 3 cut(s) 45, 204, 336
BseGI GGATG 2 cut(s) 84, 546
BseLI CCNNNNNNNGG 2 cut(s) 60, 269
BseMII CTCAG 4 cut(s) 201, 300, 392, 456
BseNI ACTGG 3 cut(s) 45, 433, 535
BseXI GCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 5, 44, 50, 603
BshNI GGYRCC 1 cut(s) 578
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 60, 269
BsmAI GTCTC 2 cut(s) 150, 390
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 4 cut(s) 5, 44, 50, 603
Bso31I GGTCTC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 27, 63, 76
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 1 cut(s) 107
BspANI GGCC 4 cut(s) 5, 44, 50, 603
BspCNI CTCAG 4 cut(s) 202, 301, 391, 455
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 65, 334, 580
BspPI GGATC 3 cut(s) 58, 71, 71
BspT107I GGYRCC 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 390
BsrI ACTGG 3 cut(s) 45, 433, 535
BssECI CCNNGG 3 cut(s) 45, 204, 336
BssMI GATC 3 cut(s) 27, 63, 76
BssT1I CCWWGG 2 cut(s) 204, 336
Bst2UI CCWGG 2 cut(s) 47, 177
Bst4CI ACNGT 2 cut(s) 502, 583
BstAFI CTTAAG 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 5 cut(s) 210, 309, 378, 414, 442
BstENI CCTNNNNNAGG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 84, 546
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 3 cut(s) 30, 66, 79
BstMAI GTCTC 2 cut(s) 150, 390
BstMBI GATC 3 cut(s) 27, 63, 76
BstMWI GCNNNNNNNGC 3 cut(s) 206, 473, 551
BstNI CCWGG 2 cut(s) 47, 177
BstSCI CCNGG 2 cut(s) 45, 175
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 270
BsuRI GGCC 4 cut(s) 5, 44, 50, 603
BtsCI GGATG 2 cut(s) 84, 546
BtsIMutI CAGTG 2 cut(s) 513, 528
Cac8I GCNNGC 1 cut(s) 601
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 38, 579
CviQI GTAC 2 cut(s) 38, 579
DdeI CTNAG 5 cut(s) 210, 309, 378, 414, 442
DpnI GATC 3 cut(s) 29, 65, 78
DpnII GATC 3 cut(s) 27, 63, 76
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 204, 336
Eco31I GGTCTC 1 cut(s) 390
Eco81I CCTNAGG 1 cut(s) 414
EcoNI CCTNNNNNAGG 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 45, 175
EcoT14I CCWWGG 2 cut(s) 204, 336
ErhI CCWWGG 2 cut(s) 204, 336
FaiI YATR 8 cut(s) 32, 101, 161, 251, 373, 375, 438, 615
FaqI GGGAC 1 cut(s) 89
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 71, 533
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 551
GlaI GCGC 1 cut(s) 304
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 4 cut(s) 5, 44, 50, 603
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 305
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HindIII AAGCTT 2 cut(s) 181, 383
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 2 cut(s) 280, 355
Hpy188I TCNGA 3 cut(s) 155, 381, 445
Hpy188III TCNNGA 2 cut(s) 80, 565
Hpy8I GTNNAC 2 cut(s) 280, 355
HpyCH4III ACNGT 2 cut(s) 502, 583
HpyCH4IV ACGT 2 cut(s) 189, 366
HpyCH4V TGCA 3 cut(s) 71, 266, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 473, 551
HpyF3I CTNAG 5 cut(s) 210, 309, 378, 414, 442
HpySE526I ACGT 2 cut(s) 189, 366
HspAI GCGC 1 cut(s) 303
KpnI GGTACC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 3 cut(s) 27, 63, 76
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 2 cut(s) 115, 436
MaeI CTAG 1 cut(s) 551
MaeII ACGT 2 cut(s) 189, 366
MaeIII GTNAC 1 cut(s) 190
MalI GATC 3 cut(s) 29, 65, 78
MboI GATC 3 cut(s) 27, 63, 76
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 4 cut(s) 20, 130, 451, 534
MluNI TGGCCA 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 4 cut(s) 64, 297, 309, 614
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 502
MscI TGGCCA 1 cut(s) 50
MseI TTAA 5 cut(s) 185, 225, 255, 387, 585
Msp20I TGGCCA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 47, 177
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 2 cut(s) 47, 177
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 206, 473, 551
NdeII GATC 3 cut(s) 27, 63, 76
NlaIV GGNNCC 3 cut(s) 65, 334, 580
PdmI GAANNNNTTC 1 cut(s) 502
PfeI GAWTC 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 1 cut(s) 307
Psp1406I AACGTT 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 45, 175
PspGI CCWGG 2 cut(s) 45, 175
PspN4I GGNNCC 3 cut(s) 65, 334, 580
PspPI GGNCC 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 2 cut(s) 39, 580
RsaNI GTAC 2 cut(s) 38, 579
SaqAI TTAA 5 cut(s) 185, 225, 255, 387, 585
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 27, 63, 76
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 47, 177
SfaNI GCATC 2 cut(s) 115, 436
SmlI CTYRAG 3 cut(s) 7, 254, 593
SmoI CTYRAG 3 cut(s) 7, 254, 593
Sse9I AATT 4 cut(s) 20, 130, 451, 534
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 45, 175
StyI CCWWGG 2 cut(s) 204, 336
TaaI ACNGT 2 cut(s) 502, 583
TaiI ACGT 2 cut(s) 192, 369
TaqI TCGA 1 cut(s) 165
TaqII GACCGA 1 cut(s) 584
TasI AATT 4 cut(s) 20, 130, 451, 534
TatI WGTACW 1 cut(s) 37
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 5 cut(s) 185, 225, 255, 387, 585
Tru9I TTAA 5 cut(s) 185, 225, 255, 387, 585
TscAI CASTG 2 cut(s) 513, 535
TseI GCWGC 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 2 cut(s) 513, 535
Vha464I CTTAAG 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 502
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.