Prupe.2G051900_v2.0.a1

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000346
Physical Location & Seq
Reverse (-)
6031545 .. 6032535
991 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G051900.1

Sequence Viewer

Length: 645 bp
ATGGCCTTGAGATATGTTCAATTGCTGATCATATTTGTACTAGCCCTGGCCACCTACAAAAGGGTCCTTGCAAGTGATCCCGACATCCTTTCCTCCTACATAGTCCCGGAAAATAACAAAGTTGATGCTAATTTCTCTACTTACACTGGATTCTGGGACATATTCGATGATGTTCCTGGAACCTTAAACATAACGAAAGCTGCCTTGGCTGAGTTCCCTGCTCTTGATGGACAGAATGTGTCGTACGCCATGCTTAAATATCCTGCGAACGAGGACTCCTCAGATTGGAAAGAATTCAATCTTCATCCTCACACCCACCCTCACGCCGCTGAACTTCTATTCCTTGTTGGTTCCTTGGAAGTAGGGTTCATGGACACCAAAAACGTCCTGTATACACAGAAGCTTAAAGTTGAAGACCTATTTGTGTTTCCTAAGGGATTAGTCCATTGCCAGTATAACTCATTTGCTAATTTACCCACCCATGCCGATTCAGCATTCGGAAGTGCAAATGCTGGAACAGTTTCAGTGCTTATATATATGTTTGTGTTTGGCACAGGAATTGATAATGCCATCCTGGTGAAATCATTCAAGACCGATGTTGGTACCGTTAAGAAGCTCAAGGCTGGCCTCACCACTCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

215

Amino Acids

23.65

Weight (kDa)

5.94

Isoelectric Point (pI)

21.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 602
AccB1I GGYRCC 1 cut(s) 602
AccI GTMKAC 1 cut(s) 392
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 3 cut(s) 39, 245, 604
AfiI CCNNNNNNNGG 2 cut(s) 60, 285
AgsI TTSAA 4 cut(s) 20, 298, 413, 589
AjnI CCWGG 3 cut(s) 45, 175, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AloI GAACNNNNNNTCC 6 cut(s) 260, 292, 324, 350, 356, 382
AluBI AGCT 3 cut(s) 200, 403, 616
AluI AGCT 3 cut(s) 200, 403, 616
AlwI GGATC 1 cut(s) 71
AoxI GGCC 3 cut(s) 3, 48, 625
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 3 cut(s) 293, 520, 584
Asp718I GGTACC 1 cut(s) 602
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 589, 622
AvaII GGWCC 1 cut(s) 64
AxyI CCTNAGG 1 cut(s) 432
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 221, 578
BciT130I CCWGG 3 cut(s) 47, 177, 575
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 1 cut(s) 107
BfaI CTAG 1 cut(s) 41
BisI GCNGC 2 cut(s) 201, 327
BlsI GCNGC 2 cut(s) 202, 328
Bme1390I CCNGG 4 cut(s) 47, 107, 177, 575
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 4 cut(s) 65, 181, 352, 604
BmrFI CCNGG 4 cut(s) 47, 107, 177, 575
BmsI GCATC 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 420
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpuEI CTTGAG 2 cut(s) 28, 602
BpuMI CCSGG 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 45, 204, 354
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 285
Bse1I ACTGG 2 cut(s) 151, 451
Bse21I CCTNAGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 445
BseBI CCWGG 3 cut(s) 47, 177, 575
BseDI CCNNGG 3 cut(s) 45, 204, 354
BseGI GGATG 3 cut(s) 84, 304, 570
BseLI CCNNNNNNNGG 2 cut(s) 60, 285
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 2 cut(s) 201, 294
BseNI ACTGG 2 cut(s) 151, 451
BseRI GAGGAG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 3 cut(s) 5, 50, 627
BshNI GGYRCC 1 cut(s) 602
BsiSI CCGG 1 cut(s) 107
BsiWI CGTACG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 89, 170
BslI CCNNNNNNNGG 2 cut(s) 60, 285
BsmFI GGGAC 2 cut(s) 89, 170
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 3 cut(s) 5, 50, 627
Bsp143I GATC 2 cut(s) 27, 76
BspACI CCGC 1 cut(s) 327
BspANI GGCC 3 cut(s) 5, 50, 627
BspCNI CTCAG 2 cut(s) 202, 293
BspLI GGNNCC 4 cut(s) 65, 181, 352, 604
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 2 cut(s) 151, 451
BssECI CCNNGG 3 cut(s) 45, 204, 354
BssMI GATC 2 cut(s) 27, 76
BssNAI GTATAC 1 cut(s) 393
BssT1I CCWWGG 2 cut(s) 204, 354
Bst1107I GTATAC 1 cut(s) 393
Bst2UI CCWGG 3 cut(s) 47, 177, 575
Bst4CI ACNGT 2 cut(s) 520, 607
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 3 cut(s) 210, 280, 432
BstENI CCTNNNNNAGG 1 cut(s) 58
BstF5I GGATG 3 cut(s) 84, 304, 570
BstKTI GATC 2 cut(s) 30, 79
BstMBI GATC 2 cut(s) 27, 76
BstMWI GCNNNNNNNGC 2 cut(s) 206, 491
BstNI CCWGG 3 cut(s) 47, 177, 575
BstSCI CCNGG 4 cut(s) 45, 105, 175, 573
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 420
BstZ17I GTATAC 1 cut(s) 393
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 3 cut(s) 5, 50, 627
BtsCI GGATG 3 cut(s) 84, 304, 570
BtsIMutI CAGTG 2 cut(s) 144, 531
Cac8I GCNNGC 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 3 cut(s) 38, 244, 603
CviAII CATG 3 cut(s) 250, 370, 482
CviJI RGCY 9 cut(s) 5, 44, 50, 200, 209, 403, 616, 623, 627
CviKI_1 RGCY 9 cut(s) 5, 44, 50, 200, 209, 403, 616, 623, 627
CviQI GTAC 3 cut(s) 38, 244, 603
DdeI CTNAG 3 cut(s) 210, 280, 432
DpnI GATC 2 cut(s) 29, 78
DpnII GATC 2 cut(s) 27, 76
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 204, 354
Eco47I GGWCC 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 432
EcoNI CCTNNNNNAGG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 3 cut(s) 45, 175, 573
EcoT14I CCWWGG 2 cut(s) 204, 354
ErhI CCWWGG 2 cut(s) 204, 354
FaeI CATG 3 cut(s) 253, 373, 485
FaqI GGGAC 2 cut(s) 89, 170
FatI CATG 3 cut(s) 249, 369, 481
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 1 cut(s) 392
Fnu4HI GCNGC 2 cut(s) 201, 327
FokI GGATG 3 cut(s) 71, 291, 557
Fsp4HI GCNGC 2 cut(s) 201, 327
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 201, 327
HaeIII GGCC 3 cut(s) 5, 50, 627
HapII CCGG 1 cut(s) 107
Hin1II CATG 3 cut(s) 253, 373, 485
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 3 cut(s) 150, 275, 488
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 589, 622
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 2 cut(s) 283, 500
Hpy188III TCNNGA 3 cut(s) 80, 224, 589
Hpy8I GTNNAC 1 cut(s) 393
HpyCH4III ACNGT 2 cut(s) 520, 607
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 2 cut(s) 71, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 491
HpyF3I CTNAG 3 cut(s) 210, 280, 432
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 3 cut(s) 253, 373, 485
KpnI GGTACC 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 2 cut(s) 27, 76
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 384
MalI GATC 2 cut(s) 29, 78
MboI GATC 2 cut(s) 27, 76
MboII GAAGA 2 cut(s) 293, 425
MfeI CAATTG 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 5 cut(s) 20, 130, 293, 469, 558
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 6 cut(s) 103, 265, 289, 318, 330, 638
Mox20I TGGCCA 1 cut(s) 50
MroXI GAANNNNTTC 3 cut(s) 293, 520, 584
MscI TGGCCA 1 cut(s) 50
MseI TTAA 4 cut(s) 185, 255, 405, 609
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 4 cut(s) 47, 107, 177, 575
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 494
MvaI CCWGG 3 cut(s) 47, 177, 575
MwoI GCNNNNNNNGC 2 cut(s) 206, 491
NciI CCSGG 1 cut(s) 107
NdeII GATC 2 cut(s) 27, 76
NlaIII CATG 3 cut(s) 253, 373, 485
NlaIV GGNNCC 4 cut(s) 65, 181, 352, 604
PctI GAATGC 1 cut(s) 494
PdmI GAANNNNTTC 3 cut(s) 293, 520, 584
PfeI GAWTC 2 cut(s) 150, 488
Pfl23II CGTACG 1 cut(s) 243
PfoI TCCNGGA 2 cut(s) 105, 175
PkrI GCNGC 2 cut(s) 202, 328
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 3 cut(s) 45, 175, 573
PspGI CCWGG 3 cut(s) 45, 175, 573
PspLI CGTACG 1 cut(s) 243
PspN4I GGNNCC 4 cut(s) 65, 181, 352, 604
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
RsaI GTAC 3 cut(s) 39, 245, 604
RsaNI GTAC 3 cut(s) 38, 244, 603
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 4 cut(s) 185, 255, 405, 609
SatI GCNGC 2 cut(s) 201, 327
Sau3AI GATC 2 cut(s) 27, 76
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 4 cut(s) 47, 107, 177, 575
SetI ASST 7 cut(s) 56, 185, 202, 387, 405, 420, 618
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 2 cut(s) 7, 617
SmoI CTYRAG 2 cut(s) 7, 617
Sse9I AATT 5 cut(s) 20, 130, 293, 469, 558
SsiI CCGC 1 cut(s) 327
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 45, 105, 175, 573
StyI CCWWGG 2 cut(s) 204, 354
TaaI ACNGT 2 cut(s) 520, 607
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 165
TaqII GACCGA 1 cut(s) 608
TasI AATT 5 cut(s) 20, 130, 293, 469, 558
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 2 cut(s) 150, 488
Tru1I TTAA 4 cut(s) 185, 255, 405, 609
Tru9I TTAA 4 cut(s) 185, 255, 405, 609
TscAI CASTG 2 cut(s) 151, 531
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 293, 358
TspRI CASTG 2 cut(s) 151, 531
VpaK11BI GGWCC 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 58
XapI RAATTY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 392
XmnI GAANNNNTTC 3 cut(s) 293, 520, 584
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.