Rorug05G0231500

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000346
Physical Location & Seq
Forward (+)
24135556 .. 24138099
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0231500.1

Sequence Viewer

Length: 1092 bp
ATGGCCTGCAATTCCTTCCTTCCAAGTTTCTGCGTCTTCTTGCTTTTCTTTCTGTACGGGGTTTCGTATACAGTTACGGAGGCTCGTGTGATTCCGGCCATGTTTGTTTTCGGAGACTCCCTAGTAGATGTGGGCAACAACAATTACCTCAGGTATTCATTTGCCAAAGCAAACTTTCCTCACAATGGGATCGACTTTCCGACCAGAAAACCAACCGGCAGGTTCGGCAATGGCAAGAATGCTGCAGATCTTATTGCTGAGAAAATGGGGTTGCCGACGATACCACCATATCTCTCCATGTCATCCAAATCAAACAAGAGCATTACACAGTTCCTAAACGGCGTTAACTTTGCATCTGGAGCTTCCAAAATCTTAAACGACATAGATCCACAATATCCCTTTTCCATACCTTTGGAAAAACAAGTAGAGTACTATTTGGCAGTGCATAAAGACCTAGTGCAAGGGCTAGGAGCCTCCAGAGCACAAATTTATTTATCAAAATCTCTCTTCCTCATTATCACGGGAAGCAATGACATCTACAACTACTTTGACTCGTTAAGTAACAGCACACAACAGCAGTATGTGAACTCCATTGTTCTCATCTTCAAAGAACAAGTGAAGCGGCTGTATGATTATGGTGCACGCAAATTTTCGATTGTTGGGGTTGGGGTTATCGGATGCACACCATCAGAAAGGAATGAGCAGGCGGACAGAAAATGCAATGAAGATACAAATCGATTGTCACTCAAGTACAATCAAGCACTCGTGTCCATGTTGAAGAATTTGGCATCAGAGCTCAGAGGCATAAACTACTCCTACTTTGATGGTTACAGCGTCATGCAGAACTTCATCCAAAAACCAACAGCTCATGGATTTTCTGAGGTTAAAGCTGCTTGCTGTGGTCTTGGGAAGCTCAATGCCGATGCTCCTTGCCTGCCATTTGCGACTTACTGCACCAACAGAAGCAACCATCTGTTCTGGGACAGAACGCATCCCACTGAGGCAGCTCATCGCAAGCTTGTGGATTATATGCTTTATGGTCCTTTACAATACACATTTCCACTCAATGTGAAAAATCTAGTTGACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

363

Amino Acids

40.71

Weight (kDa)

8.84

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 35 - 343 7.5e-36 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 68
AciI CCGC 2 cut(s) 622, 707
AclWI GGATC 2 cut(s) 197, 380
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 3 cut(s) 486, 647, 781
AfaI GTAC 3 cut(s) 56, 431, 752
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 607, 778
AluBI AGCT 7 cut(s) 362, 796, 866, 890, 913, 1007, 1018
AluI AGCT 7 cut(s) 362, 796, 866, 890, 913, 1007, 1018
Alw21I GWGCWC 3 cut(s) 484, 643, 798
Alw26I GTCTC 1 cut(s) 108
Alw44I GTGCAC 1 cut(s) 639
AlwI GGATC 2 cut(s) 197, 380
AoxI GGCC 2 cut(s) 3, 96
ApaLI GTGCAC 1 cut(s) 639
ApeKI GCWGC 3 cut(s) 242, 890, 1004
ApoI RAATTY 3 cut(s) 486, 647, 781
ArsI GACNNNNNNTTYG 2 cut(s) 725, 757
AspS9I GGNCC 1 cut(s) 1040
AvaII GGWCC 1 cut(s) 1040
AxyI CCTNAGG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 643
BanII GRGCYC 1 cut(s) 798
BauI CACGAG 2 cut(s) 84, 764
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 3 cut(s) 484, 643, 798
BbvI GCAGC 3 cut(s) 229, 877, 1016
BccI CCATC 3 cut(s) 694, 818, 978
BceAI ACGGC 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 4 cut(s) 122, 455, 467, 1079
BfmI CTRYAG 1 cut(s) 243
BfuAI ACCTGC 1 cut(s) 210
BglII AGATCT 1 cut(s) 247
BisI GCNGC 4 cut(s) 243, 623, 891, 1005
BlsI GCNGC 4 cut(s) 244, 624, 892, 1006
BmcAI AGTACT 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 1040
BmgT120I GGNCC 1 cut(s) 1040
BmiI GGNNCC 1 cut(s) 472
BmsI GCATC 5 cut(s) 362, 668, 797, 913, 1000
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 378, 460
BpuEI CTTGAG 1 cut(s) 731
Bsa29I ATCGAT 1 cut(s) 736
BsaBI GATNNNNATC 1 cut(s) 732
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 215
Bse21I CCTNAGG 1 cut(s) 149
Bse3DI GCAATG 3 cut(s) 235, 535, 727
Bse8I GATNNNNATC 1 cut(s) 732
BseCI ATCGAT 1 cut(s) 736
BseGI GGATG 4 cut(s) 302, 683, 849, 991
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 3 cut(s) 235, 535, 727
BseMII CTCAG 5 cut(s) 163, 249, 811, 870, 990
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 3 cut(s) 229, 877, 1016
BsgI GTGCAG 1 cut(s) 937
BshFI GGCC 2 cut(s) 5, 98
BshVI ATCGAT 1 cut(s) 736
BsiHKAI GWGCWC 3 cut(s) 484, 643, 798
BsiSI CCGG 2 cut(s) 95, 216
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 995
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 2 cut(s) 5, 98
Bsp1286I GDGCHC 3 cut(s) 484, 643, 798
Bsp143I GATC 3 cut(s) 189, 247, 385
BspACI CCGC 2 cut(s) 622, 707
BspANI GGCC 2 cut(s) 5, 98
BspCNI CTCAG 5 cut(s) 162, 250, 810, 871, 991
BspDI ATCGAT 1 cut(s) 736
BspLI GGNNCC 1 cut(s) 472
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 2 cut(s) 197, 380
BsrDI GCAATG 3 cut(s) 235, 535, 727
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssMI GATC 3 cut(s) 189, 247, 385
BssNAI GTATAC 1 cut(s) 69
BssSI CACGAG 2 cut(s) 84, 764
Bst1107I GTATAC 1 cut(s) 69
Bst2BI CACGAG 2 cut(s) 84, 764
Bst4CI ACNGT 2 cut(s) 73, 330
Bst6I CTCTTC 1 cut(s) 512
BstC8I GCNNGC 6 cut(s) 7, 643, 705, 895, 935, 1016
BstDEI CTNAG 5 cut(s) 149, 258, 797, 879, 999
BstF5I GGATG 4 cut(s) 302, 683, 849, 991
BstKTI GATC 3 cut(s) 192, 250, 388
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 189, 247, 385
BstMWI GCNNNNNNNGC 3 cut(s) 225, 359, 479
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 3 cut(s) 229, 877, 1016
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 2 cut(s) 247, 385
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 2 cut(s) 247, 385
BstZ17I GTATAC 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 736
Bsu36I CCTNAGG 1 cut(s) 149
BsuRI GGCC 2 cut(s) 5, 98
BsuTUI ATCGAT 1 cut(s) 736
BtgZI GCGATG 1 cut(s) 995
BtsCI GGATG 4 cut(s) 302, 683, 849, 991
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 447, 996
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 6 cut(s) 7, 643, 705, 895, 935, 1016
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 1040
ClaI ATCGAT 1 cut(s) 736
CseI GACGC 2 cut(s) 22, 823
Csp6I GTAC 3 cut(s) 55, 430, 751
CviAII CATG 5 cut(s) 100, 298, 772, 838, 869
CviQI GTAC 3 cut(s) 55, 430, 751
DdeI CTNAG 5 cut(s) 149, 258, 797, 879, 999
DpnI GATC 3 cut(s) 191, 249, 387
DpnII GATC 3 cut(s) 189, 247, 385
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
EciI GGCGGA 1 cut(s) 722
Ecl136II GAGCTC 1 cut(s) 796
Eco24I GRGCYC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 1040
Eco53kI GAGCTC 1 cut(s) 796
Eco81I CCTNAGG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 798
FaeI CATG 5 cut(s) 103, 301, 775, 841, 872
FaqI GGGAC 1 cut(s) 995
FatI CATG 5 cut(s) 99, 297, 771, 837, 868
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 4 cut(s) 243, 623, 891, 1005
FokI GGATG 4 cut(s) 289, 690, 836, 978
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 4 cut(s) 243, 623, 891, 1005
FspBI CTAG 4 cut(s) 122, 455, 467, 1079
GluI GCNGC 4 cut(s) 243, 623, 891, 1005
GsuI CTGGAG 2 cut(s) 378, 460
HaeIII GGCC 2 cut(s) 5, 98
HapII CCGG 2 cut(s) 95, 216
HgaI GACGC 2 cut(s) 22, 823
Hin1II CATG 5 cut(s) 103, 301, 775, 841, 872
HincII GTYRAC 2 cut(s) 346, 1084
HindII GTYRAC 2 cut(s) 346, 1084
HindIII AAGCTT 1 cut(s) 1016
HinfI GANTC 3 cut(s) 91, 116, 551
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 2 cut(s) 95, 216
Hpy166II GTNNAC 5 cut(s) 69, 346, 586, 641, 1084
Hpy188I TCNGA 7 cut(s) 113, 201, 677, 691, 793, 800, 880
Hpy188III TCNNGA 2 cut(s) 357, 477
Hpy8I GTNNAC 5 cut(s) 69, 346, 586, 641, 1084
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 25, 29
HpyCH4III ACNGT 2 cut(s) 73, 330
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 359, 479
HpyF3I CTNAG 5 cut(s) 149, 258, 797, 879, 999
Hsp92II CATG 5 cut(s) 103, 301, 775, 841, 872
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 189, 247, 385
LmnI GCTCC 3 cut(s) 359, 470, 931
Lsp1109I GCAGC 3 cut(s) 229, 877, 1016
LweI GCATC 5 cut(s) 362, 668, 797, 913, 1000
MaeI CTAG 4 cut(s) 122, 455, 467, 1079
MaeIII GTNAC 4 cut(s) 73, 560, 741, 827
MalI GATC 3 cut(s) 191, 249, 387
MboI GATC 3 cut(s) 189, 247, 385
MboII GAAGA 5 cut(s) 28, 499, 595, 737, 790
MflI RGATCY 2 cut(s) 247, 385
MhlI GDGCHC 3 cut(s) 484, 643, 798
MluCI AATT 5 cut(s) 10, 142, 486, 647, 781
MlyI GAGTC 2 cut(s) 110, 545
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 8 cut(s) 73, 158, 189, 484, 521, 794, 874, 994
MseI TTAA 4 cut(s) 345, 374, 557, 885
MspI CCGG 2 cut(s) 95, 216
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 225, 359, 479
NdeII GATC 3 cut(s) 189, 247, 385
NlaIII CATG 5 cut(s) 103, 301, 775, 841, 872
NlaIV GGNNCC 1 cut(s) 472
NmuCI GTSAC 1 cut(s) 741
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 4 cut(s) 244, 624, 892, 1006
PleI GAGTC 2 cut(s) 110, 545
PpsI GAGTC 2 cut(s) 110, 545
Psp124BI GAGCTC 1 cut(s) 798
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 1040
PstI CTGCAG 1 cut(s) 247
PsuI RGATCY 2 cut(s) 247, 385
RsaI GTAC 3 cut(s) 56, 431, 752
RsaNI GTAC 3 cut(s) 55, 430, 751
SacI GAGCTC 1 cut(s) 798
SaqAI TTAA 4 cut(s) 345, 374, 557, 885
SatI GCNGC 4 cut(s) 243, 623, 891, 1005
Sau3AI GATC 3 cut(s) 189, 247, 385
Sau96I GGNCC 1 cut(s) 1040
ScaI AGTACT 1 cut(s) 431
SchI GAGTC 2 cut(s) 110, 545
SduI GDGCHC 3 cut(s) 484, 643, 798
SfaNI GCATC 5 cut(s) 362, 668, 797, 913, 1000
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 1040
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 5 cut(s) 10, 142, 486, 647, 781
SsiI CCGC 2 cut(s) 622, 707
SspMI CTAG 4 cut(s) 122, 455, 467, 1079
SstI GAGCTC 1 cut(s) 798
TaaI ACNGT 2 cut(s) 73, 330
TaqI TCGA 3 cut(s) 192, 653, 736
TasI AATT 5 cut(s) 10, 142, 486, 647, 781
TatI WGTACW 2 cut(s) 429, 750
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 4 cut(s) 345, 374, 557, 885
Tru9I TTAA 4 cut(s) 345, 374, 557, 885
TscAI CASTG 2 cut(s) 447, 1003
TseFI GTSAC 1 cut(s) 741
TseI GCWGC 3 cut(s) 242, 890, 1004
Tsp45I GTSAC 1 cut(s) 741
TspDTI ATGAA 3 cut(s) 147, 738, 838
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 2 cut(s) 447, 1003
VneI GTGCAC 1 cut(s) 639
VpaK11BI GGWCC 1 cut(s) 1040
XapI RAATTY 3 cut(s) 486, 647, 781
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 4 cut(s) 122, 455, 467, 1079
ZrmI AGTACT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.