Rorug05G0231900

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000346
Physical Location & Seq
Forward (+)
24165325 .. 24166855
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0231900.1

Sequence Viewer

Length: 777 bp
ATGGAGTTGGGGAGATTTCTATGCCTGTTCTTGGTTTGCTTGACGTGTTTTCTCTCTGCAACAGAAGGATCCAAGTTTTACGTTGGTGGGAGAGACGGGTGGGTTTTGAAACCATCTGAGAGTTACAACCACTGGGCTGAGAGGAATAGGTTCCTAGTCAATGACACTCTCTATTTCAAGTACAACAAAGGATCGGACTCGGTTCTGGTGGTGAACAAGGACAGTTTCTTCAACTGCAACACAAGCAACCCAATTCAGAAACTGGATGACGGCAATTCCGAGTTCAAGTTTGATAGGTCTGGACCATTCTATTTCATCAGTGGACAAGATGGTAACTGCGCAAAGGGTCAGAAACTAATTATCATAGTTCTCGCCGTCAGGCACCGCCAAACTCCTCCGGCTCAGCCTCCTATGGCGGCGCCACCACAAGGCTCAGCGCCAGCACCTGTACCATCAAAAGGCTCAGCCCCAGCTGCCGCACCATCAGGTCCATCATCATCACCCTCACTTGCGCCAAGTACTACCCCAATAACATCTCCAGTTCCAGCTCCGGCCGCCGCTACTACTCCAACCTCGTCTCCTCCTAGCCCGGTGGGGCCCGAACCGACACCGTCCGGAGCTGCTCCTTCCGGGGAAGTGACGTCACCTCCACCGGGGTCGAACCAGGCATCGACAGCACCGAATCAAAACGGAGCGTATGGTGTAACGGCATCGAGCGTGTTGGTGTCTTCGGTTGTTGTTTTGGTCAGTTTGGCTCTTATGAGCAGCTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

258

Amino Acids

26.81

Weight (kDa)

8.26

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 3.7e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 644
Acc16I TGCGCA 1 cut(s) 340
AccB1I GGYRCC 2 cut(s) 381, 418
AccIII TCCGGA 1 cut(s) 614
AciI CCGC 5 cut(s) 385, 416, 477, 555, 558
AclWI GGATC 3 cut(s) 63, 76, 199
AcoI YGGCCR 1 cut(s) 552
AcyI GRCGYC 2 cut(s) 419, 641
AfaI GTAC 3 cut(s) 182, 450, 520
AfiI CCNNNNNNNGG 4 cut(s) 31, 428, 458, 653
AflIII ACRYGT 1 cut(s) 44
AgsI TTSAA 4 cut(s) 109, 178, 232, 286
AjiI CACGTC 1 cut(s) 45
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 4 cut(s) 473, 548, 620, 768
AluI AGCT 4 cut(s) 473, 548, 620, 768
Alw26I GTCTC 2 cut(s) 87, 582
AlwI GGATC 3 cut(s) 63, 76, 199
AlwNI CAGNNNCTG 2 cut(s) 262, 446
Aor13HI TCCGGA 1 cut(s) 614
AoxI GGCC 2 cut(s) 552, 596
ApaI GGGCCC 1 cut(s) 600
ApeKI GCWGC 3 cut(s) 473, 620, 765
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 4 cut(s) 341, 421, 439, 514
AspS9I GGNCC 4 cut(s) 302, 488, 596, 597
AsuC2I CCSGG 3 cut(s) 590, 631, 654
AsuHPI GGTGA 3 cut(s) 223, 492, 636
AvaII GGWCC 2 cut(s) 302, 488
BaeGI GKGCMC 1 cut(s) 600
BamHI GGATCC 1 cut(s) 68
BanI GGYRCC 2 cut(s) 381, 418
BanII GRGCYC 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 720
BbvI GCAGC 2 cut(s) 460, 607
BccI CCATC 5 cut(s) 121, 323, 460, 490, 499
BceAI ACGGC 3 cut(s) 286, 359, 723
BciT130I CCWGG 1 cut(s) 665
BcnI CCSGG 3 cut(s) 590, 631, 654
BcoDI GTCTC 2 cut(s) 87, 582
BfaI CTAG 2 cut(s) 155, 585
BfoI RGCGCY 2 cut(s) 422, 440
BisI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
BlpI GCTNAGC 3 cut(s) 402, 433, 463
BlsI GCNGC 7 cut(s) 418, 475, 478, 556, 559, 622, 767
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 4 cut(s) 590, 631, 654, 665
Bme18I GGWCC 2 cut(s) 302, 488
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 4 cut(s) 302, 488, 596, 597
BmiI GGNNCC 6 cut(s) 70, 152, 383, 420, 597, 598
BmrFI CCNGG 4 cut(s) 590, 631, 654, 665
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 2 cut(s) 677, 719
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 720
BpmI CTGGAG 1 cut(s) 522
Bpu1102I GCTNAGC 3 cut(s) 402, 433, 463
BpuMI CCSGG 3 cut(s) 590, 631, 654
BsaHI GRCGYC 2 cut(s) 419, 641
BsaJI CCNNGG 2 cut(s) 630, 653
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 4 cut(s) 562, 592, 631, 661
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 428, 458, 653
Bse1I ACTGG 3 cut(s) 137, 267, 539
BseAI TCCGGA 1 cut(s) 614
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 2 cut(s) 630, 653
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 4 cut(s) 31, 428, 458, 653
BseMII CTCAG 5 cut(s) 108, 129, 416, 447, 477
BseNI ACTGG 3 cut(s) 137, 267, 539
BseRI GAGGAG 2 cut(s) 384, 570
BseSI GKGCMC 1 cut(s) 600
BseX3I CGGCCG 1 cut(s) 552
BseXI GCAGC 2 cut(s) 460, 607
BseYI CCCAGC 1 cut(s) 469
Bsh1285I CGRYCG 1 cut(s) 555
BshFI GGCC 2 cut(s) 554, 598
BshNI GGYRCC 2 cut(s) 381, 418
BsiEI CGRYCG 1 cut(s) 555
BsiSI CCGG 6 cut(s) 398, 551, 590, 615, 630, 653
BslI CCNNNNNNNGG 4 cut(s) 31, 428, 458, 653
BsmAI GTCTC 2 cut(s) 87, 582
BsmBI CGTCTC 2 cut(s) 87, 582
BsnI GGCC 2 cut(s) 554, 598
Bsp120I GGGCCC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 600
Bsp13I TCCGGA 1 cut(s) 614
Bsp143I GATC 2 cut(s) 68, 191
Bsp1720I GCTNAGC 3 cut(s) 402, 433, 463
BspACI CCGC 5 cut(s) 385, 416, 477, 555, 558
BspANI GGCC 2 cut(s) 554, 598
BspCNI CTCAG 5 cut(s) 109, 130, 415, 446, 476
BspEI TCCGGA 1 cut(s) 614
BspLI GGNNCC 6 cut(s) 70, 152, 383, 420, 597, 598
BspPI GGATC 3 cut(s) 63, 76, 199
BspT107I GGYRCC 2 cut(s) 381, 418
BsrI ACTGG 3 cut(s) 137, 267, 539
BssECI CCNNGG 2 cut(s) 630, 653
BssMI GATC 2 cut(s) 68, 191
BssNI GRCGYC 2 cut(s) 419, 641
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 224, 612
BstACI GRCGYC 2 cut(s) 419, 641
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 5 cut(s) 117, 138, 402, 433, 463
BstF5I GGATG 1 cut(s) 271
BstH2I RGCGCY 2 cut(s) 422, 440
BstHHI GCGC 4 cut(s) 341, 421, 439, 514
BstKTI GATC 2 cut(s) 71, 194
BstMAI GTCTC 2 cut(s) 87, 582
BstMBI GATC 2 cut(s) 68, 191
BstMCI CGRYCG 1 cut(s) 555
BstMWI GCNNNNNNNGC 4 cut(s) 243, 473, 554, 674
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 4 cut(s) 588, 629, 652, 663
BstSLI GKGCMC 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 460, 607
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BstZI CGGCCG 1 cut(s) 552
BsuRI GGCC 2 cut(s) 554, 598
BtrI CACGTC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 130, 325
Cac8I GCNNGC 1 cut(s) 441
CaiI CAGNNNCTG 2 cut(s) 262, 446
CfoI GCGC 4 cut(s) 341, 421, 439, 514
Cfr13I GGNCC 4 cut(s) 302, 488, 596, 597
Csp6I GTAC 3 cut(s) 181, 449, 519
CviQI GTAC 3 cut(s) 181, 449, 519
DdeI CTNAG 5 cut(s) 117, 138, 402, 433, 463
DinI GGCGCC 1 cut(s) 420
DpnI GATC 2 cut(s) 70, 193
DpnII GATC 2 cut(s) 68, 191
EaeI YGGCCR 1 cut(s) 552
EagI CGGCCG 1 cut(s) 552
EclXI CGGCCG 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 2 cut(s) 302, 488
Eco52I CGGCCG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 420
EheI GGCGCC 1 cut(s) 420
Esp3I CGTCTC 2 cut(s) 87, 582
FaiI YATR 5 cut(s) 22, 365, 413, 699, 761
Fnu4HI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
FspBI CTAG 2 cut(s) 155, 585
FspI TGCGCA 1 cut(s) 340
GlaI GCGC 4 cut(s) 340, 420, 438, 513
GluI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
GsaI CCCAGC 1 cut(s) 473
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 2 cut(s) 422, 440
HaeIII GGCC 2 cut(s) 554, 598
HapII CCGG 6 cut(s) 398, 551, 590, 615, 630, 653
HhaI GCGC 4 cut(s) 341, 421, 439, 514
Hin1I GRCGYC 2 cut(s) 419, 641
Hin6I GCGC 4 cut(s) 339, 419, 437, 512
HinP1I GCGC 4 cut(s) 339, 419, 437, 512
HinfI GANTC 2 cut(s) 197, 682
HpaII CCGG 6 cut(s) 398, 551, 590, 615, 630, 653
HphI GGTGA 3 cut(s) 223, 492, 636
Hpy166II GTNNAC 2 cut(s) 214, 323
Hpy188I TCNGA 5 cut(s) 118, 196, 258, 280, 351
Hpy188III TCNNGA 2 cut(s) 300, 615
Hpy8I GTNNAC 2 cut(s) 214, 323
HpyAV CCTTC 2 cut(s) 59, 636
HpyCH4III ACNGT 2 cut(s) 224, 612
HpyCH4IV ACGT 3 cut(s) 44, 81, 641
HpyCH4V TGCA 2 cut(s) 59, 237
HpyF10VI GCNNNNNNNGC 4 cut(s) 243, 473, 554, 674
HpyF3I CTNAG 5 cut(s) 117, 138, 402, 433, 463
HpySE526I ACGT 3 cut(s) 44, 81, 641
Hsp92I GRCGYC 2 cut(s) 419, 641
HspAI GCGC 4 cut(s) 339, 419, 437, 512
KasI GGCGCC 1 cut(s) 418
Kpn2I TCCGGA 1 cut(s) 614
Kzo9I GATC 2 cut(s) 68, 191
LmnI GCTCC 4 cut(s) 553, 617, 628, 692
Lsp1109I GCAGC 2 cut(s) 460, 607
LweI GCATC 2 cut(s) 677, 719
MaeI CTAG 2 cut(s) 155, 585
MaeII ACGT 3 cut(s) 44, 81, 641
MaeIII GTNAC 5 cut(s) 122, 332, 637, 642, 703
MalI GATC 2 cut(s) 70, 193
MboI GATC 2 cut(s) 68, 191
MboII GAAGA 2 cut(s) 220, 720
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 3 cut(s) 252, 274, 357
Mly113I GGCGCC 1 cut(s) 419
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 7 cut(s) 135, 405, 417, 514, 583, 591, 657
MroI TCCGGA 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 6 cut(s) 398, 551, 590, 615, 630, 653
MspR9I CCNGG 4 cut(s) 590, 631, 654, 665
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 4 cut(s) 243, 473, 554, 674
NarI GGCGCC 1 cut(s) 419
NciI CCSGG 3 cut(s) 590, 631, 654
NdeII GATC 2 cut(s) 68, 191
NlaIV GGNNCC 6 cut(s) 70, 152, 383, 420, 597, 598
NmuCI GTSAC 2 cut(s) 637, 642
NsbI TGCGCA 1 cut(s) 340
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 677
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 682
PflFI GACNNNGTC 1 cut(s) 610
PkrI GCNGC 7 cut(s) 418, 475, 478, 556, 559, 622, 767
PleI GAGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 6 cut(s) 70, 152, 383, 420, 597, 598
PspOMI GGGCCC 1 cut(s) 596
PspPI GGNCC 4 cut(s) 302, 488, 596, 597
PstNI CAGNNNCTG 2 cut(s) 262, 446
PsuI RGATCY 1 cut(s) 68
PsyI GACNNNGTC 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 3 cut(s) 182, 450, 520
RsaNI GTAC 3 cut(s) 181, 449, 519
SatI GCNGC 7 cut(s) 417, 474, 477, 555, 558, 621, 766
Sau3AI GATC 2 cut(s) 68, 191
Sau96I GGNCC 4 cut(s) 302, 488, 596, 597
ScaI AGTACT 1 cut(s) 520
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 590, 631, 654, 665
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 2 cut(s) 677, 719
SfoI GGCGCC 1 cut(s) 420
SinI GGWCC 2 cut(s) 302, 488
Sse9I AATT 3 cut(s) 252, 274, 357
SsiI CCGC 5 cut(s) 385, 416, 477, 555, 558
SspDI GGCGCC 1 cut(s) 418
SspMI CTAG 2 cut(s) 155, 585
StyD4I CCNGG 4 cut(s) 588, 629, 652, 663
TaaI ACNGT 2 cut(s) 224, 612
TaiI ACGT 3 cut(s) 47, 84, 644
TaqI TCGA 3 cut(s) 659, 671, 713
TasI AATT 3 cut(s) 252, 274, 357
TatI WGTACW 2 cut(s) 180, 518
TauI GCSGC 4 cut(s) 419, 479, 557, 560
TfiI GAWTC 1 cut(s) 682
TscAI CASTG 2 cut(s) 137, 325
TseFI GTSAC 2 cut(s) 637, 642
TseI GCWGC 3 cut(s) 473, 620, 765
Tsp45I GTSAC 2 cut(s) 637, 642
TspDTI ATGAA 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 137, 325
Tth111I GACNNNGTC 1 cut(s) 610
VpaK11BI GGWCC 2 cut(s) 302, 488
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 2 cut(s) 155, 585
ZraI GACGTC 1 cut(s) 642
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.