MD11G1167300.v1.1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000346
Physical Location & Seq
Forward (+)
17750950 .. 17751564
615 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1167300.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGCAGCTCTCAAATTCTTTTCACTAGTAATTTCTTCAATCGCATTTGTCCAAATGGCCATGGCCGGAGACCCGGACATTATTACCGACTTCATTGCTCCTCCAAACGGAACAGTAGATGGCAACTTCTTCACATACACCGCATTTCGCGCTCTTGTTGGGGGCGGCCCTCCCACGGCTTTCAAGATATTAAAGGCAACCATGGCTGAGTTCCCTGCTCTCAATGGCCAGAGTGTTTCATACGCCGTCCTCGAATTCCCATCTAATAGTACCAATCCACCACACACTCATCCTCGCGCCGCTGAACTCCTTTTCCTTATTGACGGTACCCTCGAAGTCGGTTTTGTTGACACCAAAAACAAACTCTTTACACAGACCCTTCAAGTAGGTGATCTTTTTGTATTTCCCAAGGGACTAGCACACTTTCAGTACAATGCTGATCCACAATTCCCAGCTCTGGCAGTGTCTGCCTTTGGAAGTGCAAATGCAGGAACTGTATCAATACCTAACACCTTATTTGCCACCGGCGTTGATGACAATGTCTTGGCTATCTCCTTCAAGACGGATGTTGCCACCATTCAAAAGCTCAAGGCTGGACTTGCACCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

205

Amino Acids

21.58

Weight (kDa)

5.48

Isoelectric Point (pI)

14.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 64 - 193 2.1e-32 Cupin
Cupin_2 PF07883 84 - 156 5.1e-10 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 326
AccII CGCG 2 cut(s) 150, 297
AciI CCGC 3 cut(s) 141, 165, 300
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 3 cut(s) 57, 63, 226
AcsI RAATTY 2 cut(s) 14, 254
AfaI GTAC 3 cut(s) 271, 328, 431
AfiI CCNNNNNNNGG 3 cut(s) 107, 175, 457
AgsI TTSAA 5 cut(s) 39, 184, 383, 559, 581
AhlI ACTAGT 1 cut(s) 25
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 3 cut(s) 8, 455, 586
AluI AGCT 3 cut(s) 8, 455, 586
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 2 cut(s) 467, 494
AoxI GGCC 4 cut(s) 57, 63, 166, 226
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 14, 254
Asp718I GGTACC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 152, 299
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 401
BalI TGGCCA 2 cut(s) 59, 228
BanI GGYRCC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 113, 268
BceAI ACGGC 2 cut(s) 192, 230
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 63
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 2 cut(s) 26, 416
BisI GCNGC 3 cut(s) 6, 166, 300
BlsI GCNGC 3 cut(s) 7, 167, 301
Bme1390I CCNGG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 4 cut(s) 60, 174, 201, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 175, 457
Bse118I RCCGGY 1 cut(s) 524
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 4 cut(s) 60, 174, 201, 408
BseGI GGATG 2 cut(s) 289, 571
BseLI CCNNNNNNNGG 3 cut(s) 107, 175, 457
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 451
Bsh1236I CGCG 2 cut(s) 150, 297
BshFI GGCC 4 cut(s) 59, 65, 168, 228
BshNI GGYRCC 1 cut(s) 326
BsiSI CCGG 3 cut(s) 66, 74, 525
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 3 cut(s) 107, 175, 457
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 4 cut(s) 59, 65, 168, 228
Bso31I GGTCTC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 391, 439
Bsp19I CCATGG 2 cut(s) 60, 201
BspACI CCGC 3 cut(s) 141, 165, 300
BspANI GGCC 4 cut(s) 59, 65, 168, 228
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 2 cut(s) 150, 297
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 524
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 4 cut(s) 60, 174, 201, 408
BssMI GATC 2 cut(s) 391, 439
BssT1I CCWWGG 3 cut(s) 60, 201, 408
Bst4CI ACNGT 3 cut(s) 115, 326, 496
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 207
BstDSI CCRYGG 3 cut(s) 60, 174, 201
BstF5I GGATG 2 cut(s) 289, 571
BstFNI CGCG 2 cut(s) 150, 297
BstHHI GCGC 2 cut(s) 152, 299
BstKTI GATC 2 cut(s) 394, 442
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 2 cut(s) 391, 439
BstMWI GCNNNNNNNGC 4 cut(s) 149, 203, 467, 599
BstSCI CCNGG 1 cut(s) 72
BstUI CGCG 2 cut(s) 150, 297
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 4 cut(s) 59, 65, 168, 228
BtgI CCRYGG 3 cut(s) 60, 174, 201
BtsCI GGATG 2 cut(s) 289, 571
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
CaiI CAGNNNCTG 2 cut(s) 467, 494
CfoI GCGC 2 cut(s) 152, 299
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 270, 327, 430
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 3 cut(s) 61, 202, 612
CviQI GTAC 3 cut(s) 270, 327, 430
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 393, 441
DpnII GATC 2 cut(s) 391, 439
EaeI YGGCCR 3 cut(s) 57, 63, 226
Eco130I CCWWGG 3 cut(s) 60, 201, 408
Eco31I GGTCTC 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 254
EcoT14I CCWWGG 3 cut(s) 60, 201, 408
ErhI CCWWGG 3 cut(s) 60, 201, 408
FaeI CATG 3 cut(s) 64, 205, 615
FaiI YATR 5 cut(s) 62, 136, 203, 241, 613
FaqI GGGAC 1 cut(s) 426
FatI CATG 3 cut(s) 60, 201, 611
Fnu4HI GCNGC 3 cut(s) 6, 166, 300
FokI GGATG 2 cut(s) 276, 578
Fsp4HI GCNGC 3 cut(s) 6, 166, 300
FspBI CTAG 2 cut(s) 26, 416
GlaI GCGC 2 cut(s) 151, 298
GluI GCNGC 3 cut(s) 6, 166, 300
GsaI CCCAGC 1 cut(s) 455
HaeIII GGCC 4 cut(s) 59, 65, 168, 228
HapII CCGG 3 cut(s) 66, 74, 525
HhaI GCGC 2 cut(s) 152, 299
Hin1II CATG 3 cut(s) 64, 205, 615
Hin6I GCGC 2 cut(s) 150, 297
HinP1I GCGC 2 cut(s) 150, 297
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HpaII CCGG 3 cut(s) 66, 74, 525
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 349
Hpy188III TCNNGA 2 cut(s) 184, 559
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 2 cut(s) 389, 565
HpyCH4III ACNGT 3 cut(s) 115, 326, 496
HpyCH4V TGCA 3 cut(s) 482, 488, 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 203, 467, 599
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 3 cut(s) 64, 205, 615
HspAI GCGC 2 cut(s) 150, 297
KpnI GGTACC 1 cut(s) 330
Kzo9I GATC 2 cut(s) 391, 439
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 9 cut(s) 79, 87, 228, 242, 443, 465, 474, 538, 579
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 26, 416
MalI GATC 2 cut(s) 393, 441
MboI GATC 2 cut(s) 391, 439
MboII GAAGA 2 cut(s) 27, 121
MlsI TGGCCA 2 cut(s) 59, 228
MluCI AATT 4 cut(s) 14, 30, 254, 446
MluNI TGGCCA 2 cut(s) 59, 228
MnlI CCTC 5 cut(s) 111, 180, 260, 303, 341
Mox20I TGGCCA 2 cut(s) 59, 228
MscI TGGCCA 2 cut(s) 59, 228
MseI TTAA 1 cut(s) 191
Msp20I TGGCCA 2 cut(s) 59, 228
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 3 cut(s) 66, 74, 525
MspR9I CCNGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 150, 297
MwoI GCNNNNNNNGC 4 cut(s) 149, 203, 467, 599
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 2 cut(s) 60, 201
NdeII GATC 2 cut(s) 391, 439
NlaIII CATG 3 cut(s) 64, 205, 615
NlaIV GGNNCC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 330
PflFI GACNNNGTC 1 cut(s) 539
PkrI GCNGC 3 cut(s) 7, 167, 301
PspFI CCCAGC 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 167
PstNI CAGNNNCTG 2 cut(s) 467, 494
PsyI GACNNNGTC 1 cut(s) 539
RsaI GTAC 3 cut(s) 271, 328, 431
RsaNI GTAC 3 cut(s) 270, 327, 430
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 3 cut(s) 6, 166, 300
Sau3AI GATC 2 cut(s) 391, 439
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 74
SetI ASST 6 cut(s) 10, 391, 457, 508, 515, 588
SgrAI CRCCGGYG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 4 cut(s) 14, 30, 254, 446
SsiI CCGC 3 cut(s) 141, 165, 300
SspMI CTAG 2 cut(s) 26, 416
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 3 cut(s) 60, 201, 408
TaaI ACNGT 3 cut(s) 115, 326, 496
TaqI TCGA 2 cut(s) 252, 333
TasI AATT 4 cut(s) 14, 30, 254, 446
TatI WGTACW 1 cut(s) 429
TauI GCSGC 2 cut(s) 168, 302
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 1 cut(s) 468
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 82, 228
TspGWI ACGGA 2 cut(s) 123, 578
TspRI CASTG 1 cut(s) 468
Tth111I GACNNNGTC 1 cut(s) 539
XapI RAATTY 2 cut(s) 14, 254
XspI CTAG 2 cut(s) 26, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.