Rh1AG104300

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000346
Physical Location & Seq
Reverse (-)
18159739 .. 18160014
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG104300.1

Sequence Viewer

Length: 276 bp
ATGGCCTTGAGATATTTTGCAGTACTGACATTAGTACCTGCCCTGGCCACTACTTGTAAAAGGGCCGTAGCAGATCCTGACATCCTTTCTGACTTTATAGTGCCGCAAAATACTACGAAAGTTGATGGAACATTTTTCACTTGCACTAAATTCTGTGGACTATTTGATGGAGTTGCTGAAACCTTTAAGGTAACAAAAGCTGCCTTGACTGAGTTCCCTGCTCTTGACGGCAAAGTGTGTCATATGCGGTGCTTCAATTTCCAGCAAATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

91

Amino Acids

10.08

Weight (kDa)

6.54

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 268
AciI CCGC 2 cut(s) 104, 247
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 2 cut(s) 24, 36
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 3 cut(s) 3, 45, 63
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 63
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BalI TGGCCA 1 cut(s) 47
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 119, 161
BceAI ACGGC 2 cut(s) 50, 244
BciT130I CCWGG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 2 cut(s) 104, 201
BlsI GCNGC 2 cut(s) 105, 202
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 3 cut(s) 5, 47, 65
BslI CCNNNNNNNGG 1 cut(s) 268
BsnI GGCC 3 cut(s) 5, 47, 65
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 2 cut(s) 104, 247
BspANI GGCC 3 cut(s) 5, 47, 65
BspCNI CTCAG 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 3 cut(s) 5, 47, 65
BtsCI GGATG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 23, 35
CviJI RGCY 4 cut(s) 5, 47, 65, 200
CviKI_1 RGCY 4 cut(s) 5, 47, 65, 200
CviQI GTAC 2 cut(s) 23, 35
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 42
FaiI YATR 3 cut(s) 98, 243, 245
FauNDI CATATG 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 104, 201
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 104, 201
GluI GCNGC 2 cut(s) 104, 201
HaeIII GGCC 3 cut(s) 5, 47, 65
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 77, 224
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 20, 144
HpyF3I CTNAG 1 cut(s) 210
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 29, 51, 56, 90, 231
Lsp1109I GCAGC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 149, 256
MluNI TGGCCA 1 cut(s) 47
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 243
NdeII GATC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 2 cut(s) 105, 202
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 24, 36
RsaNI GTAC 2 cut(s) 23, 35
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 104, 201
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 63
ScaI AGTACT 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 44
SetI ASST 4 cut(s) 40, 185, 192, 202
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 2 cut(s) 149, 256
SsiI CCGC 2 cut(s) 104, 247
StyD4I CCNGG 1 cut(s) 42
TasI AATT 2 cut(s) 149, 256
TatI WGTACW 1 cut(s) 22
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 268
XapI RAATTY 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.