Rh5CG346600

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000346
Physical Location & Seq
Reverse (-)
39942010 .. 39942480
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG346600.1

Sequence Viewer

Length: 471 bp
ATGCGTGTTCTTGTTGGAGGAACCCCTCCCACAACCTTCACCGTATTGAAGGCAACCTTGGCAGAGTTCCCTGCTCTTTTCGGGCAGAGTGTTTCATATGCTGTCCTTCAATTCCCATCTGGCACAGTTAACCCACTACACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTCGTTGATGGCACCCTTGAAGTGGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAAACTATTCAAGCCGGTGACCTGTTTGTGTTTCCCAAGGGACTTGTGCACTACCAGTACAATGCTGATGCACAAAACCCGGCTCTAGCCATTTCGGCCTTTGGAAGCGCAAGTGCTGGAACTGTATCAGTTCCTCCCACTTTGTTCACCACTAATATTGATGATAATGTCCTTGCTTTGTCACTGAAGACTGATGTAGCCACCGTTCAGAAACTCAAAGCTGGACTTGCTCCAAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

156

Amino Acids

16.46

Weight (kDa)

6.24

Isoelectric Point (pI)

24.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 17 - 145 4e-29 Cupin
Cupin_2 PF07883 36 - 108 9.5e-12 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 4 cut(s) 49, 110, 191, 239
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 2 cut(s) 163, 449
AluI AGCT 2 cut(s) 163, 449
Alw21I GWGCWC 2 cut(s) 165, 279
Alw44I GTGCAC 1 cut(s) 275
AoxI GGCC 1 cut(s) 324
ApaLI GTGCAC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 31, 257, 367
BaeGI GKGCMC 1 cut(s) 279
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 2 cut(s) 165, 279
BccI CCATC 2 cut(s) 124, 173
BcnI CCSGG 1 cut(s) 308
BfaI CTAG 1 cut(s) 314
BglI GCCNNNNNGGC 1 cut(s) 323
BlpI GCTNAGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 22, 184
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 422
Bpu1102I GCTNAGC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 57, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 57, 264
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 279
BshFI GGCC 1 cut(s) 326
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 2 cut(s) 165, 279
BsiSI CCGG 2 cut(s) 243, 308
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 165, 279
Bsp1720I GCTNAGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 22, 184
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 57, 264
BssT1I CCWWGG 2 cut(s) 57, 264
Bst4CI ACNGT 4 cut(s) 43, 127, 352, 433
Bst6I CTCTTC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 245
BstF5I GGATG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 338
BstMWI GCNNNNNNNGC 3 cut(s) 59, 323, 455
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 422
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 410
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 242
Csp6I GTAC 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviAII CATG 1 cut(s) 468
CviJI RGCY 9 cut(s) 163, 198, 242, 311, 317, 326, 428, 449, 466
CviKI_1 RGCY 9 cut(s) 163, 198, 242, 311, 317, 326, 428, 449, 466
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 57, 264
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 434
Eco91I GGTNACC 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 57, 264
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 2 cut(s) 57, 264
FaeI CATG 1 cut(s) 471
FaiI YATR 3 cut(s) 97, 99, 469
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 438, 470
FaqI GGGAC 1 cut(s) 282
FatI CATG 1 cut(s) 467
FauNDI CATATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 204
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 165
FspBI CTAG 1 cut(s) 314
GlaI GCGC 1 cut(s) 337
HaeIII GGCC 1 cut(s) 326
HapII CCGG 2 cut(s) 243, 308
HhaI GCGC 1 cut(s) 338
Hin1II CATG 1 cut(s) 471
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HincII GTYRAC 2 cut(s) 130, 205
HindII GTYRAC 2 cut(s) 130, 205
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 2 cut(s) 243, 308
HphI GGTGA 3 cut(s) 31, 257, 367
Hpy166II GTNNAC 4 cut(s) 130, 205, 277, 375
Hpy188I TCNGA 1 cut(s) 438
Hpy8I GTNNAC 4 cut(s) 130, 205, 277, 375
HpyAV CCTTC 3 cut(s) 43, 46, 116
HpyCH4III ACNGT 4 cut(s) 43, 127, 352, 433
HpyCH4V TGCA 2 cut(s) 277, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 323, 455
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 1 cut(s) 471
HspAI GCGC 1 cut(s) 336
KspAI GTTAAC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 168, 463
LpnPI CCDG 8 cut(s) 84, 105, 256, 263, 296, 321, 330, 435
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 2 cut(s) 245, 408
MboII GAAGA 2 cut(s) 160, 427
MhlI GDGCHC 2 cut(s) 165, 279
MluCI AATT 1 cut(s) 110
MnlI CCTC 7 cut(s) 11, 36, 159, 176, 182, 230, 372
MseI TTAA 1 cut(s) 129
MspI CCGG 2 cut(s) 243, 308
MspR9I CCNGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 59, 323, 455
NciI CCSGG 1 cut(s) 308
NdeI CATATG 1 cut(s) 97
NlaIII CATG 1 cut(s) 471
NlaIV GGNNCC 2 cut(s) 22, 184
NmuCI GTSAC 2 cut(s) 245, 408
Psp124BI GAGCTC 1 cut(s) 165
PspEI GGTNACC 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 22, 184
PsrI GAACNNNNNNTAC 2 cut(s) 417, 449
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacI GAGCTC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 165, 279
SetI ASST 6 cut(s) 38, 59, 165, 222, 252, 451
SfaNI GCATC 1 cut(s) 286
Sse9I AATT 1 cut(s) 110
SspI AATATT 1 cut(s) 385
SspMI CTAG 1 cut(s) 314
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 2 cut(s) 57, 264
TaaI ACNGT 4 cut(s) 43, 127, 352, 433
TaqI TCGA 1 cut(s) 204
TasI AATT 1 cut(s) 110
TatI WGTACW 1 cut(s) 285
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 245, 408
Tsp45I GTSAC 2 cut(s) 245, 408
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 417
VneI GTGCAC 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.