MD11G1167400.v1.1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000346
Physical Location & Seq
Forward (+)
17771883 .. 17772515
633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1167400.v1.1.491

Sequence Viewer

Length: 633 bp
ATGGCCTCCAGAACTTCCAGCCTCAAATTCTCATCACTAATAATTTTCTCATTTGCCATTGTCCAAATAGCAATAGCGGGAGACCCGGACATTCTTACTGACTTCATAGTGCCTCCAAATGCAAATGGAACTGTAGATGGAAACTTCTTTACATACACCGGCTTTCGTGCCCTTGTTGAAGGAGACCCTCCCACAGCCTTCAAGGCTATGAAGGCATCCTTGGCTGAATTCCCTGCTCTTAATGGGCAGAGTGTTTCATATGCCATCCTTCAGTTCCCAAATGGAACTACCAACCCACCACACACTCATCCTCGCTCGGCTGAGCTACTTTTCCTCGTTGGTGGTACCCTTGAAGTTGGTTTTGTTGACACCAAAAACAACCTCTTTACGCAGACGCTTCAGACAGGTGATCTATTTGTGTTTCCCAAGGGACTTGCGCACTTCCAATACAATGCTGATGCAGAAAACTCAGCCATAGCAATTTCTGCATTTGGAAGTGCAAATGCAGGAACTGTATCAATCCCCTCCACCTTGTTCACCACCGGCATCGATGACAATGTGTTAGCTATCTCGTTCAAGACTGATGTTGGCACCATTCAAAAGCTCAAGGCTGGTCTTGCTCCCAAGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

211

Amino Acids

22.15

Weight (kDa)

5.22

Isoelectric Point (pI)

13.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 73 - 196 2.8e-30 Cupin
Cupin_2 PF07883 91 - 158 2.7e-10 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 438
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 2 cut(s) 344, 590
AciI CCGC 1 cut(s) 77
AcsI RAATTY 2 cut(s) 26, 227
AcuI CTGAAG 2 cut(s) 254, 383
AfaI GTAC 1 cut(s) 346
AgsI TTSAA 5 cut(s) 179, 202, 353, 577, 599
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 325, 566, 604
AluI AGCT 3 cut(s) 325, 566, 604
Alw26I GTCTC 2 cut(s) 75, 177
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 26, 227
Asp718I GGTACC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 419, 529
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 2 cut(s) 344, 590
BccI CCATC 2 cut(s) 131, 272
BceAI ACGGC 1 cut(s) 613
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 75, 177
BfmI CTRYAG 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 203
BlpI GCTNAGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 346, 592
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 3 cut(s) 224, 448, 555
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 86
Bsa29I ATCGAT 1 cut(s) 549
BsaI GGTCTC 2 cut(s) 75, 177
BsaJI CCNNGG 2 cut(s) 219, 426
Bse118I RCCGGY 2 cut(s) 158, 542
BseCI ATCGAT 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 219, 426
BseGI GGATG 3 cut(s) 215, 264, 307
BseMII CTCAG 2 cut(s) 312, 483
BseSI GKGCMC 1 cut(s) 172
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 344, 590
BshVI ATCGAT 1 cut(s) 549
BsiSI CCGG 3 cut(s) 86, 159, 543
BslFI GGGAC 1 cut(s) 444
BsmAI GTCTC 2 cut(s) 75, 177
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 75, 177
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 409
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 313, 482
BspDI ATCGAT 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 346, 592
BspT107I GGYRCC 2 cut(s) 344, 590
BspTNI GGTCTC 2 cut(s) 75, 177
BsrFI RCCGGY 2 cut(s) 158, 542
BssAI RCCGGY 2 cut(s) 158, 542
BssECI CCNNGG 2 cut(s) 219, 426
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 2 cut(s) 219, 426
Bst4CI ACNGT 2 cut(s) 133, 514
BstAPI GCANNNNNTGC 1 cut(s) 485
BstDEI CTNAG 2 cut(s) 321, 469
BstF5I GGATG 3 cut(s) 215, 264, 307
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 2 cut(s) 75, 177
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 485, 617
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 549
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 549
BtsCI GGATG 3 cut(s) 215, 264, 307
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 2 cut(s) 158, 542
ClaI ATCGAT 1 cut(s) 549
CseI GACGC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 345
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 321, 469
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 219, 426
Eco31I GGTCTC 2 cut(s) 75, 177
Eco57I CTGAAG 2 cut(s) 254, 383
EcoRI GAATTC 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 219, 426
ErhI CCWWGG 2 cut(s) 219, 426
FaiI YATR 6 cut(s) 107, 154, 209, 259, 261, 476
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 444
FauI CCCGC 1 cut(s) 70
FauNDI CATATG 1 cut(s) 259
FokI GGATG 3 cut(s) 202, 251, 294
FspI TGCGCA 1 cut(s) 438
GlaI GCGC 1 cut(s) 438
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 86, 159, 543
HgaI GACGC 1 cut(s) 403
HhaI GCGC 1 cut(s) 439
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HpaII CCGG 3 cut(s) 86, 159, 543
HphI GGTGA 2 cut(s) 419, 529
Hpy166II GTNNAC 2 cut(s) 367, 537
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 9, 577
Hpy8I GTNNAC 2 cut(s) 367, 537
HpyAV CCTTC 4 cut(s) 173, 205, 208, 278
HpyCH4III ACNGT 2 cut(s) 133, 514
HpyCH4V TGCA 5 cut(s) 122, 461, 488, 500, 506
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 485, 617
HpyF3I CTNAG 2 cut(s) 321, 469
HspAI GCGC 1 cut(s) 437
KpnI GGTACC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 625
LpnPI CCDG 9 cut(s) 22, 31, 99, 172, 246, 390, 492, 556, 597
LweI GCATC 3 cut(s) 224, 448, 555
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 4 cut(s) 26, 42, 227, 480
MnlI CCTC 8 cut(s) 16, 32, 123, 198, 321, 344, 392, 535
MseI TTAA 1 cut(s) 240
MspI CCGG 3 cut(s) 86, 159, 543
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 485, 617
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 259
NdeII GATC 1 cut(s) 409
NlaIV GGNNCC 2 cut(s) 346, 592
NmeAIII GCCGAG 1 cut(s) 296
NsbI TGCGCA 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 346, 592
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 172
SetI ASST 6 cut(s) 327, 384, 409, 533, 568, 606
SfaNI GCATC 3 cut(s) 224, 448, 555
SfcI CTRYAG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 4 cut(s) 26, 42, 227, 480
SsiI CCGC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 219, 426
TaaI ACNGT 2 cut(s) 133, 514
TaqI TCGA 1 cut(s) 549
TasI AATT 4 cut(s) 26, 42, 227, 480
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TspDTI ATGAA 3 cut(s) 94, 224, 246
XapI RAATTY 2 cut(s) 26, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.