Rh1BG082600

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000346
Physical Location & Seq
Reverse (-)
12973473 .. 12980054
6582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG082600.1

Sequence Viewer

Length: 555 bp
ATGGCCTTGAGATATTTTGCAGTACTGACAGTAGTACTTGCCCTGGCCACTACTTCTAAAAGGGCCGTAGCAGATCCTGACATCCTTTCCGACTTTATAGTGCCGCAAAATAATACCAAAGTTGATGGAACATTTTTCACTTACACTAAATTCCGTGGACTATTTGATGGAGTTCCTGAAACCTTTAAGGTAACAAAAGCTGCCTTGACTGAGTTCCCTGCTCTTAACGGCCAAAGTGTGTCATATGCGGTGCTTCAATTTCCACCAAATGGAGTAAACCCACCTCACACTCACCCTCGCTCAGCTGAACTTCAAAAGCTTCAAGTTGGAGACATCTTTGTGTTTCCAAAGGGACTAGTCCACTATCAGTACAACTCACAGCCCAACATGCCAGCCATTGCTGTTTCAGCATTTGGAAGTGCAAATGCCGGAACAGTTTCGGTGCCACTATCAGTGTTTGCTACTGAGATTAACGATGAAATCCTCGCCAAGTCATTCAAGACTGACGTTCATACCATTGAGAAGATCAAGGCTGGCCTTGCTCCTCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

184

Amino Acids

19.94

Weight (kDa)

8.81

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 60 - 104 9.5e-07 Cupin
Cupin_1 PF00190 105 - 172 9.1e-14 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 269
AciI CCGC 2 cut(s) 104, 248
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 2 cut(s) 45, 229
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 3 cut(s) 24, 36, 371
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 4 cut(s) 257, 314, 323, 499
AhlI ACTAGT 1 cut(s) 355
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 3 cut(s) 200, 305, 319
AluI AGCT 3 cut(s) 200, 305, 319
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 5 cut(s) 3, 45, 63, 229, 535
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 284
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 119, 161
BceAI ACGGC 2 cut(s) 50, 244
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 1 cut(s) 356
BisI GCNGC 2 cut(s) 104, 201
BlpI GCTNAGC 1 cut(s) 301
BlsI GCNGC 2 cut(s) 105, 202
BmcAI AGTACT 2 cut(s) 24, 36
Bme1390I CCNGG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 44
Bpu1102I GCTNAGC 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 42, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 42, 154
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 3 cut(s) 201, 315, 456
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 5 cut(s) 5, 47, 65, 231, 537
BshNI GGYRCC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 5 cut(s) 5, 47, 65, 231, 537
Bsp143I GATC 2 cut(s) 73, 525
Bsp1720I GCTNAGC 1 cut(s) 301
BspACI CCGC 2 cut(s) 104, 248
BspANI GGCC 5 cut(s) 5, 47, 65, 231, 537
BspCNI CTCAG 3 cut(s) 202, 314, 457
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 396
BssECI CCNNGG 2 cut(s) 42, 154
BssMI GATC 2 cut(s) 73, 525
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 31, 436
BstC8I GCNNGC 2 cut(s) 393, 535
BstDEI CTNAG 3 cut(s) 210, 301, 465
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 2 cut(s) 76, 528
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 2 cut(s) 73, 525
BstMWI GCNNNNNNNGC 3 cut(s) 388, 407, 539
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 5 cut(s) 5, 47, 65, 231, 537
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 2 cut(s) 393, 535
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 3 cut(s) 23, 35, 370
CviAII CATG 1 cut(s) 388
CviQI GTAC 3 cut(s) 23, 35, 370
DdeI CTNAG 3 cut(s) 210, 301, 465
DpnI GATC 2 cut(s) 75, 527
DpnII GATC 2 cut(s) 73, 525
EaeI YGGCCR 2 cut(s) 45, 229
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 391
FaiI YATR 6 cut(s) 98, 244, 246, 389, 513, 549
FaqI GGGAC 1 cut(s) 366
FatI CATG 1 cut(s) 387
FauNDI CATATG 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 104, 201
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 104, 201
FspBI CTAG 1 cut(s) 356
GluI GCNGC 2 cut(s) 104, 201
HaeIII GGCC 5 cut(s) 5, 47, 65, 231, 537
HapII CCGG 1 cut(s) 429
Hin1II CATG 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 317
HpaII CCGG 1 cut(s) 429
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 3 cut(s) 158, 277, 361
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 77, 176, 499
Hpy8I GTNNAC 3 cut(s) 158, 277, 361
HpyCH4III ACNGT 2 cut(s) 31, 436
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 2 cut(s) 20, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 388, 407, 539
HpyF3I CTNAG 3 cut(s) 210, 301, 465
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 1 cut(s) 391
Kzo9I GATC 2 cut(s) 73, 525
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 8 cut(s) 29, 56, 90, 189, 231, 405, 442, 519
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 75, 527
MboI GATC 2 cut(s) 73, 525
MboII GAAGA 1 cut(s) 535
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 149, 257
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 114, 307
MnlI CCTC 4 cut(s) 294, 306, 494, 555
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 436
MscI TGGCCA 1 cut(s) 47
MseI TTAA 3 cut(s) 186, 225, 471
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 388, 407, 539
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 73, 525
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 1 cut(s) 444
NspI RCATGY 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 436
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 2 cut(s) 105, 202
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 3 cut(s) 24, 36, 371
RsaNI GTAC 3 cut(s) 23, 35, 370
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 3 cut(s) 186, 225, 471
SatI GCNGC 2 cut(s) 104, 201
Sau3AI GATC 2 cut(s) 73, 525
Sau96I GGNCC 1 cut(s) 63
ScaI AGTACT 2 cut(s) 24, 36
ScrFI CCNGG 1 cut(s) 44
SetI ASST 7 cut(s) 185, 192, 202, 286, 307, 321, 510
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 2 cut(s) 149, 257
SsiI CCGC 2 cut(s) 104, 248
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 31, 436
TaiI ACGT 1 cut(s) 510
TasI AATT 2 cut(s) 149, 257
TatI WGTACW 3 cut(s) 22, 34, 369
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 3 cut(s) 186, 225, 471
Tru9I TTAA 3 cut(s) 186, 225, 471
TscAI CASTG 1 cut(s) 459
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 492, 500
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 269
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 2 cut(s) 24, 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.