RchiOBHm_Chr5g0046791

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000346
Physical Location & Seq
Reverse (-)
43048646 .. 43049269
624 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32476

Sequence Viewer

Length: 624 bp
ATGGCTTCAAGAACTTCCAGTCTCAAATACTTCTCACTACTAATTTGTTCACTTGCCATTGTTCAAATGACATTGGCAGGAGATCCAGACATTCTTAGTGACTTTGTTGCGCCTCCAAATGGAACAGTAGATGCAAACTTCTTCACATACACTGGCATGCGTGTTCTTGTTGGAGGAGACGAGCCCAAAACCTTTCACACAGTACTGAATGCAACCTCGGCTGAGTTCCCTGCTCTTAATGGGCAGAGTGTTTCATATGCCGTCCATATATTCCCAGCTGGCACTGCTAACCCACCACACACTCATCCTCGCTCCGCTGAGCTCCTCTTCCTTGTTGACGGAAGCCTTGAAGTTGGCTTTGTCGACACAAAGAATAACCTCTTTACTCAGACTCTTCAGGCAGGTGACCTGTTTGTTATTCCCAAGGGACTTGTGCACTTCCAATATAATGCTGACTCAGAAAACCCTGCTATAGCAATCTCTGCCTTTGGAAGTTCAAGTGCAGGAACCGTGTCAATTCCTACCACTTTGTTTGCCACCTACATCGATGACAATGTCTTGGCTTTATCCTTCAAGACTGATGTAGCCACTATTCAAAAGCTCAAGGCTGGTCTTGCTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

207

Amino Acids

21.92

Weight (kDa)

4.98

Isoelectric Point (pI)

21.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 68 - 198 7.8e-31 Cupin
Cupin_2 PF07883 89 - 161 9.5e-12 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 363
AciI CCGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 6 cut(s) 9, 65, 350, 498, 574, 596
AluBI AGCT 3 cut(s) 278, 322, 601
AluI AGCT 3 cut(s) 278, 322, 601
Alw21I GWGCWC 2 cut(s) 324, 438
Alw26I GTCTC 2 cut(s) 26, 171
Alw44I GTGCAC 1 cut(s) 434
AlwI GGATC 1 cut(s) 77
ApaLI GTGCAC 1 cut(s) 434
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 438
BanII GRGCYC 2 cut(s) 186, 324
Bbv12I GWGCWC 2 cut(s) 324, 438
BceAI ACGGC 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 26, 171
BfmI CTRYAG 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 392
BlpI GCTNAGC 1 cut(s) 318
BmcAI AGTACT 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 508
BmsI GCATC 1 cut(s) 121
Bpu1102I GCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 587
Bsa29I ATCGAT 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 216, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 18, 157
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 216, 423
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 4 cut(s) 213, 309, 401, 471
BseNI ACTGG 2 cut(s) 18, 157
BseRI GAGGAG 2 cut(s) 189, 314
BseSI GKGCMC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 546
BsiHKAI GWGCWC 2 cut(s) 324, 438
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 26, 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 214
Bsp1286I GDGCHC 3 cut(s) 186, 324, 438
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 1 cut(s) 315
BspCNI CTCAG 4 cut(s) 214, 310, 400, 470
BspDI ATCGAT 1 cut(s) 546
BspLI GGNNCC 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 18, 157
BssECI CCNNGG 2 cut(s) 216, 423
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 127, 202, 511
Bst6I CTCTTC 2 cut(s) 332, 399
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 158, 280
BstDEI CTNAG 5 cut(s) 95, 222, 318, 387, 457
BstEII GGTNACC 1 cut(s) 404
BstF5I GGATG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 2 cut(s) 26, 171
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 218, 284, 482, 614
BstNSI RCATGY 1 cut(s) 160
BstPI GGTNACC 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 546
BsuTUI ATCGAT 1 cut(s) 546
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 150, 282
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 2 cut(s) 158, 280
CfoI GCGC 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 546
Csp6I GTAC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 1 cut(s) 157
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 5 cut(s) 95, 222, 318, 387, 457
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 332, 399
EarI CTCTTC 2 cut(s) 332, 399
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 2 cut(s) 186, 324
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 380
Eco91I GGTNACC 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 322
EcoO65I GGTNACC 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 186, 324
ErhI CCWWGG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 1 cut(s) 160
FaiI YATR 8 cut(s) 148, 158, 256, 258, 267, 269, 447, 473
FaqI GGGAC 1 cut(s) 441
FatI CATG 1 cut(s) 156
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 1 cut(s) 363
FokI GGATG 1 cut(s) 291
FriOI GRGCYC 2 cut(s) 186, 324
GlaI GCGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 2 cut(s) 337, 364
HindII GTYRAC 2 cut(s) 337, 364
HinfI GANTC 2 cut(s) 391, 455
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 4 cut(s) 50, 337, 364, 436
Hpy188I TCNGA 2 cut(s) 390, 460
Hpy188III TCNNGA 3 cut(s) 9, 86, 574
Hpy8I GTNNAC 4 cut(s) 50, 337, 364, 436
HpyAV CCTTC 1 cut(s) 580
HpyCH4III ACNGT 3 cut(s) 127, 202, 511
HpyCH4V TGCA 4 cut(s) 134, 212, 436, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 284, 482, 614
HpyF3I CTNAG 5 cut(s) 95, 222, 318, 387, 457
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 317, 327, 622
LweI GCATC 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 98, 404
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 133, 319, 386
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 186, 324, 438
MluCI AATT 2 cut(s) 42, 516
MlyI GAGTC 2 cut(s) 385, 449
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 6 cut(s) 123, 167, 226, 318, 335, 389
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 2 cut(s) 278, 317
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 4 cut(s) 218, 284, 482, 614
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 508
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 2 cut(s) 98, 404
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 392
PctI GAATGC 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 554
PleI GAGTC 2 cut(s) 385, 449
PpsI GAGTC 2 cut(s) 385, 449
Psp124BI GAGCTC 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 508
PsuI RGATCY 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 2 cut(s) 385, 449
SduI GDGCHC 3 cut(s) 186, 324, 438
SetI ASST 9 cut(s) 194, 218, 280, 324, 381, 406, 411, 542, 603
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SphI GCATGC 1 cut(s) 160
Sse9I AATT 2 cut(s) 42, 516
SsiI CCGC 1 cut(s) 315
SstI GAGCTC 1 cut(s) 324
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 3 cut(s) 127, 202, 511
TaqI TCGA 2 cut(s) 363, 546
TasI AATT 2 cut(s) 42, 516
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 157, 289
TseFI GTSAC 2 cut(s) 98, 404
Tsp45I GTSAC 2 cut(s) 98, 404
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 354, 609
TspRI CASTG 2 cut(s) 157, 289
Tth111I GACNNNGTC 1 cut(s) 554
VneI GTGCAC 1 cut(s) 434
XceI RCATGY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.