Rh5BG319800

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000346
Physical Location & Seq
Forward (+)
42826962 .. 42827522
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG319800.1

Sequence Viewer

Length: 561 bp
ATGGCAATGGCCGGAGATCCAGACATTCTTAGTGACTTCATAGCGCCTCCAAATGGAACAGTAGACGGAAACTTCTTCACATACACTGGCATGCGTGTTCTTGTTGGAGGAGACGAGCCCAAAAACTTCACAGTACTGAAGGCAACCTCGGCAGAGTTCCCTGCTCTTAATGGGCAGAGTGTTTCATATGCCTTCCTTGAATTCCCAGCTGGCACTACTAACCCACCACACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTATTGACGGTACCCTTGAAGTTGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAGACTCTTCAGACAGGCGACCTGTTTGTGTTTCCCAAGGGCCTTGTTCACTACCAGTACAATGCCGATTCACAAAACTCGGCTCTGGCAGTTTCTGCCTTTGGAAGTGCAAGTGCCGGAACTGTGTCAATCCCTACCACTTTGTTCACCACCAACATCGATGACAATGTCTTGGCTTTGTCCTTTAAGACTGATGTAGCTACCATTCAAAAGCTTAAGGCTGGTCTCGCTCCCAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

186

Amino Acids

19.72

Weight (kDa)

4.69

Isoelectric Point (pI)

19.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 39 - 175 6.2e-32 Cupin
Cupin_2 PF07883 65 - 131 1.3e-12 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 2 cut(s) 63, 294
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 158, 311
AfaI GTAC 3 cut(s) 135, 274, 377
AfiI CCNNNNNNNGG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 3 cut(s) 200, 281, 527
AluBI AGCT 4 cut(s) 209, 253, 518, 532
AluI AGCT 4 cut(s) 209, 253, 518, 532
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 105, 548
AlwI GGATC 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 2 cut(s) 9, 358
ApoI RAATTY 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 457
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 120, 255
Bbv12I GWGCWC 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 105, 548
BfoI RGCGCY 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 249
BmcAI AGTACT 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 274
Bpu1102I GCTNAGC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 147, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 91, 373
Bse3DI GCAATG 1 cut(s) 12
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 147, 354
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 240, 332
BseNI ACTGG 2 cut(s) 91, 373
BseRI GAGGAG 2 cut(s) 123, 245
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 11, 360
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 12, 435
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 105, 548
BsmBI CGTCTC 1 cut(s) 105
BsnI GGCC 2 cut(s) 11, 360
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 120, 255
Bsp143I GATC 1 cut(s) 16
Bsp1720I GCTNAGC 1 cut(s) 249
BspANI GGCC 2 cut(s) 11, 360
BspCNI CTCAG 2 cut(s) 241, 331
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 272
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 91, 373
BssECI CCNNGG 2 cut(s) 147, 354
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 4 cut(s) 61, 133, 272, 442
Bst6I CTCTTC 2 cut(s) 263, 330
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 92, 211
BstDEI CTNAG 3 cut(s) 29, 249, 318
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 2 cut(s) 105, 548
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 149, 413, 545
BstNSI RCATGY 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 2 cut(s) 11, 360
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 92, 211
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 358
ClaI ATCGAT 1 cut(s) 477
Csp6I GTAC 3 cut(s) 134, 273, 376
CviAII CATG 2 cut(s) 91, 558
CviQI GTAC 3 cut(s) 134, 273, 376
DdeI CTNAG 3 cut(s) 29, 249, 318
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 263, 330
EarI CTCTTC 2 cut(s) 263, 330
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 120, 255
Eco31I GGTCTC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 158, 311
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 2 cut(s) 120, 255
ErhI CCWWGG 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 2 cut(s) 94, 561
FaiI YATR 6 cut(s) 41, 82, 92, 187, 189, 559
FatI CATG 2 cut(s) 90, 557
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 2 cut(s) 63, 294
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 2 cut(s) 120, 255
GlaI GCGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 2 cut(s) 11, 360
HapII CCGG 2 cut(s) 12, 435
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 94, 561
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 322, 386
HpaII CCGG 2 cut(s) 12, 435
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 4 cut(s) 64, 295, 367, 465
Hpy188I TCNGA 2 cut(s) 321, 330
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 4 cut(s) 64, 295, 367, 465
HpyAV CCTTC 2 cut(s) 133, 202
HpyCH4III ACNGT 4 cut(s) 61, 133, 272, 442
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 413, 545
HpyF3I CTNAG 3 cut(s) 29, 249, 318
Hsp92II CATG 2 cut(s) 94, 561
HspAI GCGC 1 cut(s) 44
KpnI GGTACC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 258, 553
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 67, 250, 317
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 120, 255
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 6 cut(s) 57, 101, 157, 249, 266, 320
MseI TTAA 3 cut(s) 168, 504, 534
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 2 cut(s) 12, 435
MwoI GCNNNNNNNGC 3 cut(s) 149, 413, 545
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 94, 561
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 2 cut(s) 128, 377
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 386
PflFI GACNNNGTC 1 cut(s) 485
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 485
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 3 cut(s) 135, 274, 377
RsaNI GTAC 3 cut(s) 134, 273, 376
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 3 cut(s) 168, 504, 534
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 358
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 1 cut(s) 316
SduI GDGCHC 2 cut(s) 120, 255
SetI ASST 7 cut(s) 149, 211, 255, 312, 342, 520, 534
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 94
Sse9I AATT 1 cut(s) 200
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 4 cut(s) 61, 133, 272, 442
TaqI TCGA 2 cut(s) 294, 477
TasI AATT 1 cut(s) 200
TatI WGTACW 2 cut(s) 133, 375
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 3 cut(s) 168, 504, 534
Tru9I TTAA 3 cut(s) 168, 504, 534
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 28, 174
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 485
Vha464I CTTAAG 1 cut(s) 533
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 2 cut(s) 63, 294
ZrmI AGTACT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.