pycom11g13850

germin-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
13681015 .. 13681881
867 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g13850.1

Sequence Viewer

Length: 675 bp
ATGGCCTCCAGAACTTCCAGCCTCAAATTCTTCTCACTAATAATTTTCTCATTTGCCATTGTCCAAATAGCAATAGCGGGAGACCCGGACATTCTTACTGACTTCATAGTGCCTCCAAATGCAAATGGAACCGTAGATGGAAACTTCTTTACATACACCGGCTTTCGTGCCCTTGTTGAAGGAGACCCTCCCACAGCCTTCAAGGCTATGAAGGCATCCTTGGCTGAATTCCCTGCTCTTAATGGGCAGAGTGTTTCGTATGCCGTCCTTCAGTTCCCAAATGGCACTACCAACCCACCACACACTCATCCTCGCTCGGCTGAGCTACTTTTCCTCGTTGGTGGTACCCTTGAAGTTGGTTTCGTTGACACCAAAAACAACCTCTTTACGCAGACGCTTCAGACAGGTGATCTATTTGTGTTTCCAAAGGGACTTGCGCACTTCCAGTACAATGCTGATGCAGAAAACCCAGCCATAGCAATTTCTGCATTTGGAAGTGCAAATGCAGGAACTGTATCAATACCCTCCACCTTGTTCACCACCGGCATCGACGACAATGTGTTGGCTATCTCCTTCAAGACTGATGTTGGCACCATTCAAAAGCTTAAGGCTGGTCTTGCTCCCAAGCCGTCCTTCGGCGCAAAGTCAAAAAAGGTCGCTCAAAAATTAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

225

Amino Acids

23.65

Weight (kDa)

6.83

Isoelectric Point (pI)

11.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 73 - 196 1.4e-30 Cupin
Cupin_2 PF07883 90 - 162 7.1e-11 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 438
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 2 cut(s) 344, 590
AciI CCGC 1 cut(s) 77
AcsI RAATTY 2 cut(s) 26, 227
AcuI CTGAAG 2 cut(s) 254, 383
AfaI GTAC 2 cut(s) 346, 449
AfiI CCNNNNNNNGG 1 cut(s) 635
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 5 cut(s) 179, 202, 353, 577, 599
AjuI GAANNNNNNNTTGG 4 cut(s) 203, 235, 617, 649
AluBI AGCT 2 cut(s) 325, 604
AluI AGCT 2 cut(s) 325, 604
Alw26I GTCTC 2 cut(s) 75, 177
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 26, 227
Asp718I GGTACC 1 cut(s) 344
AspLEI GCGC 2 cut(s) 439, 641
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 419, 529
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 2 cut(s) 344, 590
BccI CCATC 1 cut(s) 131
BceAI ACGGC 2 cut(s) 248, 613
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 75, 177
BfrI CTTAAG 1 cut(s) 605
BglI GCCNNNNNGGC 1 cut(s) 203
BlpI GCTNAGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 130, 346, 592
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 3 cut(s) 224, 448, 555
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 86
BsaI GGTCTC 2 cut(s) 75, 177
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse118I RCCGGY 2 cut(s) 158, 542
Bse1I ACTGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 215, 307
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 445
BseSI GKGCMC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 469
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 344, 590
BsiSI CCGG 3 cut(s) 86, 159, 543
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 2 cut(s) 75, 177
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 75, 177
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 409
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 130, 346, 592
BspT107I GGYRCC 2 cut(s) 344, 590
BspTI CTTAAG 1 cut(s) 605
BspTNI GGTCTC 2 cut(s) 75, 177
BsrFI RCCGGY 2 cut(s) 158, 542
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 2 cut(s) 158, 542
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 133, 514
BstAFI CTTAAG 1 cut(s) 605
BstAPI GCANNNNNTGC 1 cut(s) 485
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 215, 307
BstHHI GCGC 2 cut(s) 439, 641
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 2 cut(s) 75, 177
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 485, 617
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 215, 307
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 2 cut(s) 439, 641
Cfr10I RCCGGY 2 cut(s) 158, 542
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 345, 448
CviQI GTAC 2 cut(s) 345, 448
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 219
Eco31I GGTCTC 2 cut(s) 75, 177
Eco57I CTGAAG 2 cut(s) 254, 383
EcoRI GAATTC 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaiI YATR 5 cut(s) 107, 154, 209, 261, 476
FalI AAGNNNNNCTT 4 cut(s) 203, 235, 617, 649
FaqI GGGAC 1 cut(s) 444
FauI CCCGC 1 cut(s) 70
FokI GGATG 2 cut(s) 202, 294
FspI TGCGCA 1 cut(s) 438
GlaI GCGC 2 cut(s) 438, 640
GsaI CCCAGC 1 cut(s) 473
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 86, 159, 543
HgaI GACGC 1 cut(s) 403
HhaI GCGC 2 cut(s) 439, 641
Hin6I GCGC 2 cut(s) 437, 639
HinP1I GCGC 2 cut(s) 437, 639
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 602
HpaII CCGG 3 cut(s) 86, 159, 543
HphI GGTGA 2 cut(s) 419, 529
Hpy166II GTNNAC 2 cut(s) 367, 537
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 9, 577
Hpy8I GTNNAC 2 cut(s) 367, 537
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 6 cut(s) 173, 205, 208, 278, 583, 643
HpyCH4III ACNGT 2 cut(s) 133, 514
HpyCH4V TGCA 5 cut(s) 122, 461, 488, 500, 506
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 485, 617
HpyF3I CTNAG 1 cut(s) 321
HspAI GCGC 2 cut(s) 437, 639
KpnI GGTACC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 625
LweI GCATC 3 cut(s) 224, 448, 555
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 5 cut(s) 26, 42, 227, 480, 665
MnlI CCTC 8 cut(s) 16, 32, 123, 198, 321, 344, 392, 535
MseI TTAA 2 cut(s) 240, 606
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 3 cut(s) 86, 159, 543
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 5 cut(s) 203, 212, 221, 485, 617
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 409
NlaIV GGNNCC 3 cut(s) 130, 346, 592
NmeAIII GCCGAG 1 cut(s) 296
NsbI TGCGCA 1 cut(s) 438
PspFI CCCAGC 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 130, 346, 592
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 346, 449
RsaNI GTAC 2 cut(s) 345, 448
SaqAI TTAA 2 cut(s) 240, 606
Sau3AI GATC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 172
SetI ASST 6 cut(s) 327, 384, 409, 533, 606, 657
SfaNI GCATC 3 cut(s) 224, 448, 555
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 5 cut(s) 26, 42, 227, 480, 665
SsiI CCGC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 133, 514
TaqI TCGA 1 cut(s) 549
TasI AATT 5 cut(s) 26, 42, 227, 480, 665
TatI WGTACW 1 cut(s) 447
Tru1I TTAA 2 cut(s) 240, 606
Tru9I TTAA 2 cut(s) 240, 606
TspDTI ATGAA 2 cut(s) 94, 224
Vha464I CTTAAG 1 cut(s) 605
XapI RAATTY 2 cut(s) 26, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.